Alkan Lab for Bioinformatics and Computational Genomics at @CS_Bilkent
Ankara, Turkey
Joined June 2013
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Bilkent CompGen retweeted
Our collaborative project with Can Alkan lab for implementing the full version of locally consistent parsing (LCP) as an alternative to all kmer based sequence analysis methods is now out in Genome Biology: link.springer.com/article/10…
Bilkent CompGen retweeted
@BilkentCompGen
DATE: August 27, Wednesday @ 14:00 Place: EA 409
M.S.THESIS PRESENTATION
Using Bloom filters to quickly and efficiently characterize genomic repeats and segmental duplications
Klea Zambaku
Master Student
(Supervisor: Assoc.Prof.Can Alkan)
Bilkent CompGen retweeted
@BilkentCompGen
M.S.THESIS PRESENTATION
Efficient variation graph construction using Locally Consistent Parsing
Akmuhammet Ashyralyyev
(Supervisor: Assoc.Prof.Can Alkan)
Bilkent CompGen retweeted
Congratulations to my former MSc student and forever collaborator @FirtinaC for joining @umdcs as Assistant Professor.
📢 @umdcs is welcoming 8 new faculty in 2025–26 with expertise in AI policy, robotics, bioinformatics, vision, language models, simulation & sound design.
They’ll strengthen research & teaching across computing.
Read more: go.umd.edu/New-Faculty7-2025
Bilkent CompGen retweeted
Our consortium-wide position paper is now available as a preprint @arxiv arxiv.org/abs/2506.00597 @SAFARI_ETH_CMU @UPMEM @IBMResearch @RayanChikhi @institutpasteur @BarIlanU @CNRS
Bilkent CompGen retweeted
We are at the Genome Informatics 2024 meeting with two talks and a poster. @calkan_cs @zulal_b @camiladuitama1 @RayanChikhi in attendance.
Bilkent CompGen retweeted
We held our third plenary meeting for the BioPIM Project in beautiful Zurich, marking the close of our second review period. Since our last meeting in May, we have published three additional papers, with several more submitted and available as preprints.
Bilkent CompGen retweeted
The Genome Informatics 2024 Meeting will be hosted on the Wellcome Genome Campus @eventsWCS in Hinxton, UK, November 13-15, 2024. @calkan_cs will give an invited talk to feature hardware acceleration of bioinformatics workloads and the BioPIM Project.
Bilkent CompGen retweeted
Our BioPIM Partners organized the 5th Workshop on Accel. Arch. in Comp. Biol. and Bioinf. (AACBB) during the ISCA 2023 Conference in Orlando, FL. The workshop featured great talks on the architecture and design of hardware accelerators for comp bio. aacbb-workshop.github.io/
Bilkent CompGen retweeted
Videos of the presentations from the first day of #RECOMB2023 are now available in our @YouTube channel: youtube.com/watch?v=CzqBLKIW… Our videographers are working on the rest and we will upload more in the next few days.
Bilkent CompGen retweeted
Now with lots of TBAs!
RECOMB 2024 will be in Boston next year and the website is now up: recomb.org/recomb2024/ #RECOMB2024
Bilkent CompGen retweeted
Videos for #RECOMB2023 Satellite Workshop on Computational Methods in Genetics are now available at: youtube.com/watch?v=Vac_-j3E…
2 videos are not yet released due to missing copyright forms, and will be made available once we get them in place.
Bilkent CompGen retweeted
Photo Album for #RECOMB2023 Main Conference: photos.app.goo.gl/HF7dvQGMfV…
Bilkent CompGen retweeted
Photo Album for the #RECOMB2023 Satellite Conferences: photos.app.goo.gl/UPb1BNnk8C…
Bilkent CompGen retweeted
Presentation videos from BIO-Arch in @RECOMBconf organized by @SAFARI_ETH_CMU @ProjectBioPIM are now available in our @YouTube channel: youtube.com/playlist?list=PL…
Bilkent CompGen retweeted
Both @SAFARI_ETH_CMU and @BilkentCompGen
presented several posters, in addition to our joint poster on Characterization of Alignment and Search Algorithms for Short Reads, Long Reads, and Graph Mappers, presented by Ecem İlgün.
Bilkent CompGen retweeted
The @RECOMBconf is over and we had a blast in İstanbul. Our partners at @SAFARI_ETH_CMU organized the BIO-Arch Workshop, and a Panel on Hardware Acceleration of Bioinformatics Workloads.
Bilkent CompGen retweeted
The @ProjectBioPIM Team is at the @RECOMBconf! We organized the first BIO-Arch Workshop that we aim to launch as a Satellite Meeting next year, and the Panel on Hardware Acceleration of Bioinformatics Workloads.
