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The COVID-19 Disease Map (doi.org/10.17881/covid19-dis…), is an effort to build a comprehensive, standardized knowledge repository of SARS-CoV-2 virus-host interaction mechanisms, guided by input from domain experts and based on published work. #covidpathways.
COVID-19 Pathways retweeted
new: "Tissue-specific pathway activities: A retrospective analysis in COVID-19 patients" doi.org/10.3389/fimmu.2022.9… #COVID19 #SARSCov2

ALT FIGURE 3 Protein-pathway network of 69 changed pathways in COVID-19 patients. Pathways are shown as rectangles and the proteins present in a pathway are connected to the pathway node and shaped as circles. The pathway nodes visualize the heatmap of pathway activity change in COVID-19 patients from thyroid, lung, heart, liver, spleen, kidney and testis in that order. Blue indicates a lower pathway activity in COVID-19 patients (protein abundance distribution shifted to the left) and red indicates an increased activity (protein abundance distribution shifted to the right). Most of the pathways are highly connected with many proteins in common.
COVID-19 Pathways retweeted
Nhung Pham is presenting our work on tissue-specific pathway activity in COVID-19 patients today at the 6th Disease Map Community Meeting
@WikiPathways @CovidPathways #DMCM2021
disease-maps.org/DMCM2021
new: "COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms" embopress.org/doi/full/10.15…
COVID-19 Pathways retweeted
Our paper describing the benefits of applying the #AdverseOutcomePathway framework to #COVID19 is now finally peer-reviewed and accepted for publication in #FrontiersinPublicHealth!
frontiersin.org/articles/10.…
Due to a surprisingly slow peer-review process in combo with a field that doesn't age well we decided to publish a preprint of our first #CIAO paper describing the concept of applying the #AdverseOutcomePathway framework to #COVID19 Keep your eye on @CiaoCovid for more to come!
including the #COVID19 track discussed in our weekly telcons: biocreative.bioinformatics.u…
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COVID-19 Pathways retweeted
There are 270 new #PDB entries this week, including these 22 variant structures of the spike protein from #SARSCoV2, including B.1.1.7 (UK), B.1.351 (SA) & B.1.1.28 (Brazil) variants, solved by @sophie_gobeil, @priyam2021 et al. View all new entries at PDBe.org/latest
COVID-19 Pathways retweeted
A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection: signor.uniroma2.it/covid/ via @Genes_MDPI
@signor_database
@CovidPathways @elixir_it @BiologiaUniRM2 #ELIXIRvsCOVID19 #mdpigenes
mdpi.com/2073-4425/12/3/450
our project benefits from and contributes to the work of the EBI open data platforms.
If you have not done so already, consider filling out their survey
Dear #lifescience community, we need your 🧠
If you use #opendata, please fill in our impact survey to help us understand the value of open data resources, and to keep the data flowing.
surveymonkey.co.uk/r/EMBL-EB…
#valueopendata #openscience #FAIRdata #openaccess
maybe members from our community can coin in too? Are the PANGO lineage codes useful in our project? Please leave your comment on the Wikidata page linked below.
New COVID-19 - related proposal on @wikidata:
@arambaut 's PANGO lineage code (cov-lineages.org)
wikidata.org/wiki/Wikidata:P…
Which other properties related to SARS-CoV-2 strains you would like to see on Wikidata next?
COVID-19 Pathways retweeted
we had a @WikiPathways @CovidPathways curathon event and with quite a few pathway updates (see screenshot) and three new @wikidata items too :) Updated curation reports: wikipathways.github.io/SARS-…
COVID-19 Pathways retweeted
HT/@nightrose I just stumbled upon the Wikidata Entity Explosion extension for Chrome and Firefox. This is really awesome! Once installed the extension will list metadata from #wikidata for a given site. Tested on #inaturalist and #wikipathways. awesome! wikidata.org/wiki/Wikidata:E…
COVID-19 Pathways retweeted
revised preprint "COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms" now online: biorxiv.org/content/10.1101/…
revised preprint "COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms" now online: biorxiv.org/content/10.1101/…
COVID-19 Pathways retweeted
Webinar on "Vitamin D, Immunity and Covid-19" by @MartinHewison, February 24 organised by NuGO, @CovidPathways and @ELIXIREurope's Food and Nutrition Community: nugo.org/courses-and-trainin…
new video: "COVID-19 Disease Map, computational knowledge repository of SARS-2 virus-host interaction mechanisms" youtube.com/watch?v=t5bkkYWB…
COVID-19 Pathways retweeted
I am proud to share our latest paper on "A protocol for adding knowledge to #Wikidata: aligning resources on human coronaviruses" is online. doi.org/10.1186/s12915-020-0…
COVID-19 Pathways retweeted
Interleukin-6 Receptor Antagonists tocilizumab and sarilumab, normally used arthritis, in Critically Ill Patients with Covid-19 - Preliminary report medrxiv.org/content/10.1101/… Finds better outcome including survival
COVID-19 Pathways retweeted
Young children account for only a small percentage of COVID-19 infections, a trend that has puzzled scientists. A growing body of evidence suggests why: kids’ immune systems seem better equipped to eliminate SARS-CoV-2 than are adults’. go.nature.com/3me7E8h
COVID-19 Pathways retweeted
In todays @MaastrichtU data science seminar (in 40 minutes) I will introduce the @CovidPathways COVID-19 Disease Maps project and @bigcat_UM postdoc Nhung Pham will talk about the @WikiPathways specific efforts in our @NWO_Science project maastrichtuniversity.nl/even…





















