Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth) header
Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth) profile picture

NMBU TenureTrack in phenomics leading the PhenotypeForge. Focused on aquaculture & livestock, breeding & genetics ๐ŸŸ๐Ÿ‘๐Ÿ„. Fascinated with nature.Views my own.

ร…s, Norway
Joined February 2018
Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)Photo by Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง (@DiffordGareth)
Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
Are you our new colleague? We have an available position as #PostdoctoralResearcher in #ComparativeGenomics and #MachineLearning for #PlantBiology ๐Ÿงฌ๐ŸŒฑ๐Ÿ’ป Application deadline is 12 October 2026 (23.59 CEST) โœ… Read more and apply here ๐Ÿ‘‰tech.au.dk/en/about-the-facuโ€ฆ
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
BREEDING LEANER SALMON COULD PAY OFF FOR THE INDUSTRY A new study from @nofima shows that #salmon can be bred to use feed more efficiently. Calculations suggest that this could save the Norwegian #salmon industry more than โ‚ฌ100 million a year. @UK_NSC fishfocus.co.uk/breeding-leaโ€ฆ
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
๐Ÿ” Secure access to sensitive genomic data is critical for healthcare research & #PersonalisedMedicine. ELIXIR helps make this possible by contributing to the development of Federated EGA: data stays local but can be used globally ๐ŸŒ. loom.ly/3VIqztc
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
๐Ÿ“ฃ ELIXIR is offering an 8-week summer student placement! The student will work with the ELIXIR Website, Comms and Technical teams to improve ELIXIR website and related digital services. Apply by 3 May ๐Ÿ‘‰ loom.ly/s_fcJD4
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
Two post-doc post in ARG space and loads of internal and external collaboration Postdoctoral Research Associate in quantitative genomics elxw.fa.em3.oraclecloud.com/โ€ฆ Postdoctoral Research Associate in quantitative genetics and breeding elxw.fa.em3.oraclecloud.com/โ€ฆ
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
๐Ÿ“ข Training on โ€œGenome & Epigenome Enabled Breeding in Practiceโ€ ๐Ÿ—“๏ธ 3โ€“4 March 2026 ๐Ÿ“Wageningen Campus + online ๐Ÿ‘ฅ Only 40 spots (priority on-site) Perfect for animal breeding practitioners, PhD students, postdocs & researchers! For more geronimo-h2020.eu/finaltrainโ€ฆ
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
Bring on the bots! ๐Ÿ–ฅ๏ธ HoloSimR allows the user to explore the effect of the microbiota on the phenotypic response to selection and the effects of the environment, host genetics and symbiosis between microbial species on the composition of the microbiota. doi.org/10.1093/jas/skaf371
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
In #G3journal, @HelleBaalsrud et al. show massive genomic rearrangements and low conservation in how Mucor circinelloides fungi strains regulate genes under calcium stress, suggesting why they produce oils & pigments differently. buff.ly/viA5rIy
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
Wooden Barrel Tapping ๐Ÿ“Munich, Germany ๐Ÿ‡ฉ๐Ÿ‡ช German Beers: tasteatlas.com/best-rated-beโ€ฆ In Bavaria, beer is often served straight from traditional wooden barrels. The tapping of a fresh keg, called Anstich, is a celebrated moment in Munichโ€™s beer halls, especially when itโ€™s Augustiner, one of the cityโ€™s oldest breweries. Credits: @bierbruder
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
Borgund Stave Church in Norway was built sometime between 1180 and 1250 AD. It's part of of a group of medieval churches almost only present in Scandinavia, built with wood only and without using a single nail [๐Ÿ“น archeojobs]
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
A new national record for a Savanna goat ram was set when Lot 13 was sold for R400 000 at the Royal Genetics 2nd Production Sale. The ram was sold by Maize Valley Boerbok ,Kalahari Red and Savanna Stud to Lennon Nkosi from Mbombela, Mpumalanga: bit.ly/43KftKp
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
Are you our new colleague ๐Ÿ‘€? We have an available position as #AssociateProfessor in #QuantitativeGenetics of #sustainable #cattle #breeding ๐Ÿ„๐Ÿฎ๐Ÿงฌ Application deadline is 9 June 2025โ— Read more and apply here: tech.au.dk/en/about-the-facuโ€ฆ
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
๐Ÿ“ฃ Training course in computational genetics for plant biologists, a co-organised course by QGG and @Recrop22157, a COST Action Network, 21-22 May 2025 ๐Ÿงฌ๐ŸŒฑ Read more and sign up here: recrop-cost.com/NewsAndActivโ€ฆ
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
Come and join us at Benchmark genetics! We are looking for a senior geneticist. Great opportunities and challenges working with several aquaculture species worldwide. Even better? You can choose to work from Scotland, Norway or Chile. bmkgenetics.com/join-our-teaโ€ฆ
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
Great news! The #EMABG this time as European Master in Animal #Biodiversity and #Genomics was funded again by the EACEA !!! The call for FULL scholarship applications is open until 28th Feb 2025! For details see emabg.eu Please share this message widely.
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
We are looking for master, PhD, and postdoc individuals that would be interested by a project with fish, food-web and winter ecology project in Canada. Experience with telemetry and/or isotopes will be a great asset! If interested, DM me :)
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
September: โ€œIโ€™m on top of things, looking forward to a quiet end to the yearโ€ November:
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Gareth Difford ๐Ÿ‡ณ๐Ÿ‡ด๐Ÿ‡ฟ๐Ÿ‡ฆ๐Ÿ‡ฌ๐Ÿ‡ง retweeted
I recently made a very popular LinkedIn post about Simpson's Paradox, which resulted in an engaging conversation. Paul Julian made a great comment on the relationship between Mixed Effects Models and Simpson's Paradox that I wanted to share with you. He pointed out that when specified correctly, Mixed Effects Models can avoid being fooled by Simpson's Paradox. Unlike a naive linear model that analyzes all data at once, which might lead to misleading conclusions, mixed effects models separate fixed effects (consistent effects across all groups) and random effects (group-specific deviations from the overall trend). This allows the model to account for variations both within and between groups, leading to more accurate interpretations. In the plot below (generated from reproducible code โ€“ thanks, Paul!), you can see how different models compare: ๐Ÿ”น Fixed Effect (black line): Captures the overall relationship, assuming it is the same across all groups. ๐Ÿ”น Group Linear Model (dashed red line): Shows the trend within each subgroup, revealing how group-specific relationships can differ. ๐Ÿ”น Naive Linear Model (gray line): Fails to account for subgroup differences, which can lead to misleading conclusions due to Simpson's Paradox. ๐Ÿ”น Random Effect (blue line): Captures the variation between groups, allowing for group-specific deviations from the fixed effect. Here's the original post: linkedin.com/posts/joachim-sโ€ฆ Important Notes: Mixed effects models offer a flexible framework to address Simpson's Paradox, effectively capturing both group-level and overall trends. However, they have limitations and alternative approaches should be considered. Mixed models, like any statistical tool, can be mis-specified if key variables are omitted. In certain cases, simpler models like OLS can handle group effects just as effectively, provided the predictors are correctly specified. For longitudinal or clustered data, marginal models like GEE or MMRM may be better suited when the goal is to estimate population-average effects, especially since mixed models focus on conditional, subject-specific effects. Additionally, Simpsonโ€™s Paradox requires careful causal understanding. Grouping variables can either be confounders or colliders, which influences the choice of model. An inappropriate adjustment can lead to incorrect conclusions, making it crucial to understand the causal structure before deciding whether to use a mixed model or a simpler approach. For regular tips on data science, statistics, Python, and R programming, check out my free email newsletter. More information: eepurl.com/gH6myT #R4DS #RStats #DataAnalytics #Statistical #database #DataVisualization
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