Are you our new colleague?
We have an available position as #PostdoctoralResearcher in #ComparativeGenomics and #MachineLearning for #PlantBiology ๐งฌ๐ฑ๐ป
Application deadline is 12 October 2026 (23.59 CEST) โ
Read more and apply here ๐tech.au.dk/en/about-the-facuโฆ
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
BREEDING LEANER SALMON COULD PAY OFF FOR THE INDUSTRY A new study from @nofima shows that #salmon can be bred to use feed more efficiently. Calculations suggest that this could save the Norwegian #salmon industry more than โฌ100 million a year. @UK_NSC fishfocus.co.uk/breeding-leaโฆ
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
๐ Secure access to sensitive genomic data is critical for healthcare research & #PersonalisedMedicine. ELIXIR helps make this possible by contributing to the development of Federated EGA: data stays local but can be used globally ๐.
loom.ly/3VIqztc
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
๐ฃ ELIXIR is offering an 8-week summer student placement! The student will work with the ELIXIR Website, Comms and Technical teams to improve ELIXIR website and related digital services.
Apply by 3 May ๐ loom.ly/s_fcJD4
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
Two post-doc post in ARG space and loads of internal and external collaboration
Postdoctoral Research Associate in quantitative genomics
elxw.fa.em3.oraclecloud.com/โฆ
Postdoctoral Research Associate in quantitative genetics and breeding
elxw.fa.em3.oraclecloud.com/โฆ
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
๐ข Training on โGenome & Epigenome Enabled Breeding in Practiceโ ๐๏ธ 3โ4 March 2026 ๐Wageningen Campus + online ๐ฅ Only 40 spots (priority on-site)
Perfect for animal breeding practitioners, PhD students, postdocs & researchers! For more geronimo-h2020.eu/finaltrainโฆ
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
Bring on the bots! ๐ฅ๏ธ HoloSimR allows the user to explore the effect of the microbiota on the phenotypic response to selection and the effects of the environment, host genetics and symbiosis between microbial species on the composition of the microbiota.
doi.org/10.1093/jas/skaf371
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
In #G3journal, @HelleBaalsrud et al. show massive genomic rearrangements and low conservation in how Mucor circinelloides fungi strains regulate genes under calcium stress, suggesting why they produce oils & pigments differently. buff.ly/viA5rIy
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
Wooden Barrel Tapping
๐Munich, Germany ๐ฉ๐ช
German Beers: tasteatlas.com/best-rated-beโฆ
In Bavaria, beer is often served straight from traditional wooden barrels. The tapping of a fresh keg, called Anstich, is a celebrated moment in Munichโs beer halls, especially when itโs Augustiner, one of the cityโs oldest breweries.
Credits: @bierbruder
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
Borgund Stave Church in Norway was built sometime between 1180 and 1250 AD.
It's part of of a group of medieval churches almost only present in Scandinavia, built with wood only and without using a single nail
[๐น archeojobs]
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
A new national record for a Savanna goat ram was set when Lot 13 was sold for R400 000 at the Royal Genetics 2nd Production Sale. The ram was sold by Maize Valley Boerbok ,Kalahari Red and Savanna Stud to Lennon Nkosi from Mbombela, Mpumalanga: bit.ly/43KftKp
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
Are you our new colleague ๐?
We have an available position as #AssociateProfessor in #QuantitativeGenetics of #sustainable #cattle #breeding ๐๐ฎ๐งฌ
Application deadline is 9 June 2025โ
Read more and apply here:
tech.au.dk/en/about-the-facuโฆ
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
๐ฃ Training course in computational genetics for plant biologists, a co-organised course by QGG and @Recrop22157, a COST Action Network, 21-22 May 2025 ๐งฌ๐ฑ
Read more and sign up here: recrop-cost.com/NewsAndActivโฆ
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
Come and join us at Benchmark genetics! We are looking for a senior geneticist.
Great opportunities and challenges working with several aquaculture species worldwide.
Even better? You can choose to work from Scotland, Norway or Chile.
bmkgenetics.com/join-our-teaโฆ
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
Great news!
The #EMABG this time as European Master in Animal #Biodiversity and #Genomics was funded again by the EACEA !!!
The call for FULL scholarship applications is open until 28th Feb 2025! For details see emabg.eu
Please share this message widely.
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
We are looking for master, PhD, and postdoc individuals that would be interested by a project with fish, food-web and winter ecology project in Canada. Experience with telemetry and/or isotopes will be a great asset! If interested, DM me :)
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
September: โIโm on top of things, looking forward to a quiet end to the yearโ
November:
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
A multi-omic approach enables the reconstruction of microbial metabolic dynamics in the salmon gut in response to feed and feed supplements ๐@SabinaLLaRosa @TRHvidsten @ThePopeLab @shashankguptapn
doi.org/10.1038/s42003-024-0โฆ
Gareth Difford ๐ณ๐ด๐ฟ๐ฆ๐ฌ๐ง retweeted
I recently made a very popular LinkedIn post about Simpson's Paradox, which resulted in an engaging conversation. Paul Julian made a great comment on the relationship between Mixed Effects Models and Simpson's Paradox that I wanted to share with you.
He pointed out that when specified correctly, Mixed Effects Models can avoid being fooled by Simpson's Paradox. Unlike a naive linear model that analyzes all data at once, which might lead to misleading conclusions, mixed effects models separate fixed effects (consistent effects across all groups) and random effects (group-specific deviations from the overall trend). This allows the model to account for variations both within and between groups, leading to more accurate interpretations.
In the plot below (generated from reproducible code โ thanks, Paul!), you can see how different models compare:
๐น Fixed Effect (black line): Captures the overall relationship, assuming it is the same across all groups.
๐น Group Linear Model (dashed red line): Shows the trend within each subgroup, revealing how group-specific relationships can differ.
๐น Naive Linear Model (gray line): Fails to account for subgroup differences, which can lead to misleading conclusions due to Simpson's Paradox.
๐น Random Effect (blue line): Captures the variation between groups, allowing for group-specific deviations from the fixed effect.
Here's the original post: linkedin.com/posts/joachim-sโฆ
Important Notes: Mixed effects models offer a flexible framework to address Simpson's Paradox, effectively capturing both group-level and overall trends. However, they have limitations and alternative approaches should be considered. Mixed models, like any statistical tool, can be mis-specified if key variables are omitted. In certain cases, simpler models like OLS can handle group effects just as effectively, provided the predictors are correctly specified. For longitudinal or clustered data, marginal models like GEE or MMRM may be better suited when the goal is to estimate population-average effects, especially since mixed models focus on conditional, subject-specific effects. Additionally, Simpsonโs Paradox requires careful causal understanding. Grouping variables can either be confounders or colliders, which influences the choice of model. An inappropriate adjustment can lead to incorrect conclusions, making it crucial to understand the causal structure before deciding whether to use a mixed model or a simpler approach.
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