Promoter Database retweeted
Super excited to finally share the results of a massive effort with @ProfTimHughes to characterize the intrinsic sequence binding specificities of human transcription factors, led by @ArttuJolma, @ahcorcha, @AliFathi125, Ally Yang, and Kaitlin Laverty biorxiv.org/content/10.1101/… 1/n
Promoter Database retweeted
(1/4) In IBIS, we challenged teams from all over the world to decipher the DNA recognition code of human transcription factors. Today, we are excited to announce the Final IBIS Conference scheduled for November 27, 2024.
Promoter Database retweeted
(1/13) Excited to present the results of the large-scale benchmarking of DNA motif discovery tools using the Codebook data compendium on poorly studied human transcription factors and the Codebook Motif Explorer
dx.doi.org/10.1101/2024.11.1… | mex.autosome.org⬇️
Promoter Database retweeted
Join the IBIS Challenge: an open competition focused on the computational prediction of transcription factor binding motifs. IBIS aims to advance state-of-the-art methods for Inferring Binding Specificities of human transcription factors from diverse experimental data. (1/12)
EPDnew FTP repository archived in zenodo: zenodo.org/records/10149386
Snapshot of the EPDnew FTP directory of November 2023. The directory contains all database versions for 15 model organisms released since then.
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Important announcement:
EPD moves to a new URL: epd.expasy.org.
We are transferring the EPD server to the SIB Swiss Institute of Bioinformatics. The new server is up and ready for use. The current URL epd.epfl.ch will soon be automatically redirected.
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Promoter Database retweeted
Bioinformaticians of the world, it’s your time to shine! The SIB Bioinformatics Awards promote excellence, diversity & innovation in the field, and are now open to entries. Submit your best work & share with colleagues: tinyurl.com/yc7wywb5 #SIBawards #computationalbiology
ALT SIB created 2008 the Bioinformatics Awards to acknowledge early career bioinformaticians and ground-breaking resources of national and international standing. Bioinformaticians of the world, it's your time to shine! The SIB Bioinformatics Awards promote excellence, diversity & innovation in the field of bioinformatics, and are now open to entries. The international Awards honour bioinformatics excellence in three categories: - PhD Paper Award - Early Career Award - Innovative Resource Award
Promoter Database retweeted
We hereby announce the Breast Cancer Epigenomics Track Hub bchub.epfl.ch, a resource intended to make it easy to find, access and explore breast cancer epigenomics data from different labs. Try it or find more information in our recent preprint doi.org/10.1101/2022.05.01.4….
First EPDnew release of non-coding RNA promoter collection for H. sapiens, check out epd.epfl.ch/news.php
The ReMap 2018 Collection of regulatory regions for human (hg38, hg19) has been added to the MGA database , check out epd.vital-it.ch/news.php
A new ChIP-seq dataset for human (hg19) has been added to MGA: Mohammed 2015, Progesterone receptor modulates estrogen receptor-α action in breast cancer, check out epd.vital-it.ch/news.php
We are happy to announce the first EPDnew release of Chicken (G.gallus) and Dog (C.familiaris). Promoters are mapped to the Gallus_gallus-5.0/galGal5 and CanFam3.1/canFam3 assembly releases, check out epd.vital-it.ch/news.php
Promoter Database retweeted
Are you a #Bioinformatician looking for a new opp? Join the Variation Annotation team and contribute to @ensembl's variation resources #EMBLjobs #bioinfojobs #perl #unix #linux #mysql embl.de/jobs/searchjobs/inde…
Promoter Database retweeted
An opportunity to become a part of the ENCODE project effort:
Apply for the ENCODE-related positions at Stanford University including Software Development, Bioinformatics, Data Wrangling Management, and
Data Curation here: stanford.io/2LkYeJu
PWMScan article: a fast tool for scanning entire genomes with a position-specific weight matrix, has been recommended in F1000Prime, check out epd.vital-it.ch/news.php
Promoter Database retweeted
#Genome #Jumper, a mobile game (iOS and Android) to explore human diversity genome-jumper.sib.swiss/ @ISBSIB @UNIGEnews
Promoter Database retweeted
« Thanks to SIB and its role as first mover, #Switzerland has been a pioneer in the field of #bioinformatics » State Secretary Mauro Dell’Ambrogio @SBFI_CH at the #SIBDays18 celebration evening #lookback #SIB20years
