Institute for Quantitative Biosciences, UTokyo. We study the mechanism of transcriptional regulation in the Drosophila embryo.

Tokyo-to, Japan
Joined September 2019
How do distal enhancers control transcription dynamics in living cells? Check out our latest work published in @MolecularCell!! We show that the dynamic assembly and disassembly of TF clusters at enhancers are a major source of transcriptional bursting. cell.com/molecular-cell/full…
7
126
1
465
67,033
Takashi Fukaya retweeted
1/12 CTCF has updated its LinkedIn again! Our preprint tracks CTCF's “career” across Bilateria. From DNA-binding to transcription regulation & genome architecture. Read it: biorxiv.org/content/10.64898… And back-to-back work from Darío Lupiáñez's group: biorxiv.org/content/10.64898… vvv
1
12
47
2,875
羊土社より出版された理系総合のための生命科学第6版、4章「遺伝子の発現1」を担当しました。セントラルグマの記載について、1957年のCrickによるオリジナルの定義に従い、「配列情報の一方向性」を示すものとして改訂を行いました。 yodosha.co.jp/yodobook/book/…
2
4
1
34
2,269
いわゆる「DNA>RNA>Protein」は後年、Watsonが1965年出版のMolecular Biology of the Geneにおいて単純化して記載したものであり、オリジナルの定義とは異なる(こちらが一般に普及し、高校教科にもそのように記載されるに至った)
1
3
196
Excited to share a preprint on the structural mechanism of transcriptional activation by human Mediator, studied using integrative structural modeling. Many thanks to Lacra Bintu @BintuLacra for helpful discussions! biorxiv.org/content/10.64898… @generegulation @MED_COMPLEX
1
5
1
18
1,869
Takashi Fukaya retweeted
An excellent story on condensate ageing and amyloid fibril. For FUS, ageing condensates become glassy and arrested, while amyloid fibres grow mostly in the dilute phase outside them. Two distinct solid states coexist without directly interconverting.
Fibres are thought to emerge from a dense protein condensate ageing into a glassy state. It is now shown that protein fibres and glassy condensates may result from two competing ageing pathways. nature.com/articles/s41567-0…
3
26
1,239
Takashi Fukaya retweeted
Design of synthetic activators for programmable gene expression doi.org/10.64898/2026.10.19.…
1
34
4
169
10,050
Takashi Fukaya retweeted
Thrilled to share my freshly "baked" Baker lab paper. We took a bottom-up approach to designing transcriptional regulators. Instead of relying on natural activation domains, we designed compact proteins that recruit specific cofactors. Activators for now, repressors to come!
10
81
6
400
23,179
Takashi Fukaya retweeted
In the latest issue! Somatic epimutations cap genetic determinism in the human diploid chromatin epigenome dlvr.​it/TW0n9C
15
66
7,800
Takashi Fukaya retweeted
Ever wanted to watch chromosomes fold? lefsim simulates loop extrusion live in your browser. Add, remove and drag CTCF sites around, watch contact maps emerge, and more. lefsim.abdenlab.org
2
18
59
2,964
New Online! Scaling up measurements of the interactions that build condensates dlvr.​it/TVv4S9
9
28
2,957
Takashi Fukaya retweeted
Nifty new paper on supercoiling influence in C. elegans! "Genome architecture shapes transcriptional responses to topoisomerase depletion in C. elegans." work from Morao et al. link below 👇
1
3
23
1,244
Takashi Fukaya retweeted
Intraspecific sequence variation and complete genomes refine the identification of rapidly evolved regions in humans dlvr.​it/TVw7SB
3
7
689
Takashi Fukaya retweeted
A bright protein cluster inside a nucleus is not, by itself, evidence for a liquid droplet. In living fruit-fly embryos, researchers watched Dorsal, a protein that helps regulate the developing body plan. They changed the number of places it could bind on regulatory DNA. More binding sites produced stronger, more persistent local protein accumulations. A model based on binding, diffusion and cooperation between nearby binding events reproduced key features without requiring proteins to form a separate liquid-like phase. The result does not rule out droplets elsewhere. It gives a concrete alternative to test: perhaps the DNA binding sites help explain the crowd. New Science Advances paper: doi.org/10.1126/sciadv.aeh10…
2
11
53
4,100
Takashi Fukaya retweeted
Our Department of Developmental & Cell Biology @UCIBioSci @UCIrvine is looking for a Professor & Chair! Join our diverse and collegial team in the premier UC public system. Dept: devcell.bio.uci.edu/ Details: recruit.ap.uci.edu/JPF10452
2
3
674