Broad interest in single cell study and infectomics 🙂
Tromsø, Norway
Joined June 2019
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Jonathan Hira retweeted
Want to learn #MachineLearning? Looking for high-quality, free educational resources online?
You’ve come to the right place! Check out my free, online e-book, where you’ll find clear explanations, step-by-step walkthroughs, and visualizations of data and models.
For example, here's my chapter on k-nearest neighbors regression, including a dive deep into the concepts with easy-to-understand examples.
👉 Explore the chapter here, geostatsguy.github.io/Machin…!
Learning made simple and accessible for everyone!🚀∀.
Jonathan Hira retweeted
clinical application of targeted nanopore sequencing in pathogen detection in patients with sepsis. This study underscores the versatility of TNPseq in identifying diverse pathogens in sepsis samples, ensuring its application as a diagnostic when pathogens elude conventional isolation or are difficult to culture. #nanopore #amplicon
doi.org/10.1186/s12879-025-1…
Jonathan Hira retweeted
a nanopore 16S study! Long-read 16S rRNA amplicon sequencing reveals microbial characteristics in patients with colorectal adenomas and carcinoma lesions in Egypt. #nanopore #16S doi.org/10.1186/s13099-025-0…
Jonathan Hira retweeted
"New research platform seeks to reform academic peer review process."
thecollegefix.com/new-resear…
Jonathan Hira retweeted
Are you interested in full length 16S rRNA sequencing on @nanopore? We developed a new workflow using UMIs and R10.4+ chemistry to enable highly accurate and multiplexed microbiome profiling.
This was a long road, and I’m glad to see this out! 1/4
doi.org/10.1093/pnasnexus/pg…
Jonathan Hira retweeted
📢 Attention antibiotic tolerance researchers! Our GIANT review of 50+ years' of clinical antibiotic tolerance data is now available online in Clinical Microbiology Reviews. Check it out here: journals.asm.org/eprint/UUSI…
@ASMicrobiology @Hobbs_Lab_Micro @DeventerAshley @microclaire
Jonathan Hira retweeted
A novel barcoded nanopore sequencing workflow of high-quality, full-length bacterial 16S amplicons for taxonomic annotation of bacterial isolates and complex microbial communities. #nanopore #16S
doi.org/10.1128/msystems.008…
Jonathan Hira retweeted
Unlock the mysteries of biology with AI! Access insights from over 122k full papers with BioloGPT. 🌿🔬
Check it out for free: biologpt.com
Jonathan Hira retweeted
A lot of bioinformatics requires editing sequencing reads to facilitate QC and make them suitable for processing. To help with such tasks, @DelaneyKSull developed splitcode, now published at academic.oup.com/bioinformat… 1/
Jonathan Hira retweeted
Online now: Forecasting antimicrobial resistance evolution.
@FU_Berlin Jens Rolff & co-workers share their thoughts in @TrendsMicrobiol #ASMicrobe hubs.li/Q02BRYH40
Jonathan Hira retweeted
GenoFig: a user-friendly application for the visualisation and comparison of genomic regions academic.oup.com/bioinformat…
Jonathan Hira retweeted
Figeno, my visualization tool for genomics🎨🧬, is now published in Bioinformatics! doi.org/10.1093/bioinformati…
It can generate publication-quality figures for sequencing data along genomic coordinates: bigwig, HiC, @nanopore data with base modifications, and WGS with CNAs and SVs.
Jonathan Hira retweeted
Great collaboration with Dionne’s lab (D-lab) with Baba, Loza and Hongquan leading charge - is out in @PNASNews. We describe a simple technique for rapid, antibiotic incubation-free determination of Tb drug resistance using open Raman instrument we built. pnas.org/doi/10.1073/pnas.23…
Jonathan Hira retweeted
Breakdown of the IMRaD Paper Structure (and Abstract)
ALT Several hierarchy diagrams showing what goes into a papers Abstract, Introduction, Methods, Results, and Discussion sections. Graphs and Figures from Sterk, P. J., & Rabe, K. F. (2008). The joy of writing a paper. Breathe, 4(3), 224-232.
Jonathan Hira retweeted
CozE proteins modulate lipoteichoic acid biosynthesis and membrane homeostasis in Staphylococcus aureus. @Morten3891 @DanStreamer @JWVeening #mBio journals.asm.org/doi/10.1128…
Jonathan Hira retweeted
ChatGPT for genomes: introducing a CRISPR-designing generative AI statnews.com/2024/05/17/arc-…
