Oral and gastrointestinal #microbiome study design and project management. Topics include relationship to diet and wellness (cancer/ostomy/IBD) views are my own
Nebraska, USA
Joined November 2008
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Jacques I. retweeted
Risks of GI Malignancies in Short Bowel Syndrome Patients Treated With Teduglutide: Results From TriNetX - received the #ACG2025 Award in the Small Intestine Category. Under the mentorship of our chief, Dr Rochling. Presented by our Dr Nurlan Aliyev @IBD_Afzali
Jacques I. retweeted
🎤 After several virtual keynotes, I’m thrilled to deliver my first in-person keynote at the Omics in Action Mini Summit at @unmc!
🙌 Honored to share the stage with microbiome stalwarts @BucciVanni and @nsegata. I’ll be speaking on #MultimodalAI and its applications in microbiome and multi-omics data integration.
🗓️ December 5, 2025
📍 University of Nebraska Medical Center (UNMC)
🎟️ Registration: Free but required
🤝 Looking forward to engaging discussions and reconnecting with the Nebraska Microbiome Research Group — this time in person!
Many thanks to @Jacques_I, and the team for the kind invitation and thoughtful organization. 🙏
#Microbiome 🔬 #MultiOmics #DataScience #MachineLearning #MultimodalAI #Keynote
Jacques I. retweeted
🌿 Excited to announce the Hawkins Family Inflammatory Bowel Disease Fellowship at @UNMC_GIHEP, July 1, 2026 - June 30, 2027, at the Frederick F. Paustian IBD Center in Omaha, Nebraska!
#IBD #Gastroenterology #MedEd @NebraskaMed @CrohnsColitisFn
Jacques I. retweeted
Our Gl fellow @BilalNiazi424 & Dr.
@ArielAday, led a successful First Job Negotiation session for the @AmCollegeGastro Training Committee at #ACG2025 in Phoenix - a full house indeed 🙌🏼
Outstanding work!
@UTSWGastroHep @UNMC_GIHEP
@BilalMohammadMD
#FutureOfGl
Jacques I. retweeted
We are hosting a Microbiome conference on December 5th. Can't wait to see you there!
Book: To help you perform successful omics studies from the start: Metagenomics for Microbiology 2nd edition/Elsevier. From methods to new applications and technological advances. #HostMicrobiome #Bioinformatics #AcademicTwitter
shop.elsevier.com/books/meta…
Book: Metagenomics for Microbiology; new applications to technological advances. The chapters cover methodology, analysis, AI, omics, and more.
@Mallick_Himel @naupakaz @CazzHarrold @AaronPomerantz @DPortik @jewilki #microbiome #omics #DataScience
shop.elsevier.com/books/meta…
Jacques I. retweeted
A bit of good news these days 🙏 Humbled to be recognized for our work. Grateful for the journey and eager to see where it takes us next! 🚀 #Statistics #Biostatistics #Omics #DataScience #MultimodalAI
Link: phs.weill.cornell.edu/news/d…
Jacques I. retweeted
𝐓𝐨𝐝𝐚𝐲 𝐢𝐬 𝐭𝐡𝐞 𝐝𝐚𝐲! 🎉
Excited to share that the book 𝘔𝘦𝘵𝘢𝘨𝘦𝘯𝘰𝘮𝘪𝘤𝘴 𝘧𝘰𝘳 𝘔𝘪𝘤𝘳𝘰𝘣𝘪𝘰𝘭𝘰𝘨𝘺 officially launches today (𝐀𝐮𝐠𝐮𝐬𝐭 𝟒)! Honored to have contributed a chapter titled “𝐓𝐡𝐞 𝐄𝐯𝐞𝐧𝐭 𝐨𝐟 𝐌𝐮𝐥𝐭𝐢𝐨𝐦𝐢𝐜𝐬 𝐢𝐧 𝐌𝐞𝐭𝐚𝐠𝐞𝐧𝐨𝐦𝐢𝐜𝐬” 🧬📖
We are grateful to editors @Jacques_I and Maria C. Rivera for bringing together this timely and well-curated volume.
📘 Explore or order here: shop.elsevier.com/books/meta…
#Statistics #Biostatistics #MultimodalAI #Microbiome #DataScience
Metabolome and microbiome data to decipher the keystone organism(s) in the digestive tract of marmosets #microbiome #metabolome #gutmicrobiome doi.org/10.1128/msystems.002…
My lab is looking for a postdoctoral fellow (Metagenome/Metabolome/Human digestive tract #microbiome). The position is available immediately and involves working with existing datasets. #postdoc #postdoctoral Location: USA - Omaha, Nebraska Apply at: unmc.peopleadmin.com/posting…
Interaction diet microbiome and colon cancer across cohorts enabled by epidemiological data in 259,000+ participants. #microbiota #nutrition #cancer @NFHC_NU
doi.org/10.1053/j.gastro.202…
When a microbiome project starts with 500+ participants and enable epidemiological research in 259,000+ participants. #microbiome #diet @UNMC_GIHEP @unmc_research #nutrition #coloncancer doi.org/10.1053/j.gastro.202…
Jacques I. retweeted
The newest bioBakery tool is here - check out the MaAsLin 3 preprint spearheaded by Will Nickols @hutlab! 🚀
From handling compositionality to expanding biological hypotheses, MaAsLin 3 is a major upgrade from MaAsLin 2.
Dive into the paper to see how it outperforms state-of-the-art tools! 🌟 #Microbiome #DataScience #Statistics #Biostatistics
Paper: biorxiv.org/content/10.1101/…
Code: github.com/biobakery/Maaslin…
Jacques I. retweeted
Congrats to Kusum Kharbanda, PHD and Peter Mannon, MD for being listed in the top cited researchers!
unmc.edu/newsroom/2024/12/13…
My lab is looking for a postdoctoral fellow (metagenomics/#metabolome/human digestive tract
#microbiome). The position is available immediately and involves working with existing datasets from our lab.
Location: USA - Omaha, Nebraska
Apply at: unmc.peopleadmin.com/posting…
My lab is looking for a postdoctoral fellow (metagenomics/Metabolomics/human digestive tract microbiome).
The position is available immediately and involves working with existing datasets from our lab.
Location: USA - Omaha, Nebraska
Apply at: unmc.peopleadmin.com/posting…