@LabLibbrecht

This account is the news feed at https://xitter.cf/t.co/dSoEyZqv5o, Max Libbrecht's computational biology lab at Simon Fraser University, BC.

libbrechtlab.com
Joined December 2020
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Lab graduation dinner for Abe -- good luck, Abe!
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Lab social!
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🧬 Excited to share our paper "Robust chromatin state annotation," now in Genome Research, @mforoozz, @marjanfarahbod, @maxlibbrecht. Paper: bit.ly/scgrp Blog Post: bit.ly/scmbp Follow this thread for details. (1/6)👇
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Libbrecht lab at Canadian Epigenetics Meeting 2023
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New preprint: "Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway reveals disease drivers" @marjanfarahbod @mforoozz @HDaneshpajouh @bonscotthoughts @JMichaelCherry1 @maxlibbrecht biorxiv.org/content/10.1101/…

Integrative chromatin state annotation of 234 human ENCODE4 cell types using Segway reveals disease...

Towards the goal of identifying functional elements in the human genome, the fourth and final phase of the ENCODE consortium has newly profiled hundreds of human tissues using sequencing-based...

biorxiv.org
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It's official, I've been granted tenure and promoted to Associate Professor! A huge thank you to my students, colleagues, mentors and collaborators.
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New preprint: "Robust chromatin state annotation", @mforoozz @marjanfarahbod @maxlibbrecht biorxiv.org/content/10.1101/…

Robust chromatin state annotation

Background Segmentation and genome annotations (SAGA) methods such as ChromHMM and Segway are widely to annotate chromatin states in the genome. These algorithms take as input a collection of...

biorxiv.org
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New paper in @OUPBioinfo: "Integrative chromatin domain annotation through graph embedding of Hi-C data", Neda Shokraneh, Mariam Arab, @maxlibbrecht.
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Presenting on "Accurate and interpretable prediction of drug resistance in M. tuberculosis using deep learning" at the Mathematics and Statistics of Genomic Epidemiology workshop. Thanks to the organizers for the opportunity to present. @BIRS_Math birs.ca/events/2022/5-day-wo…
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Libbrecht lab retweeted
Max Libbrecht@maxlibbrecht3 Oct 2022
Review on "Obtaining genetics insights from deep learning via explainable artificial intelligence" out now in @NatureRevGenet! Thanks to co-authors @NovakovskyG, Nick Dexter, @WyWyWa, @sara_mostafavi nature.com/articles/s41576-0…

Obtaining genetics insights from deep learning via explainable artificial intelligence

Nature Reviews Genetics - In this Review, the authors describe advances in deep learning approaches in genomics, whereby researchers are moving beyond the typical ‘black box’ nature of...

nature.com
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New paper in @NatureComms: "Learning representations of chromatin contacts using a RNN identifies genomic drivers of conformation", @kevthesouza, Alexandra Maslova, @ediem_aljibury, Matthias Merkenschlager, Vijay K. Bhargava, @maxlibbrecht. doi.org/10.1038/s41467-022-3…
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New paper in @OUPBioinfo: "Continuous chromatin state feature annotation of the human epigenome", Habib Daneshpajouh, Bowen Chen, Neda Shokraneh, Shohre Masoumi, Kay C Wiese, @maxlibbrecht. doi.org/10.1093/bioinformati…

Continuous chromatin state feature annotation of the human epigenome

AbstractMotivation. Segmentation and genome annotation (SAGA) algorithms are widely used to understand genome activity and gene regulation. These methods t

academic.oup.com
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Congratulations to Dr. Alice Yue for successfully defending her PhD thesis, "Computational methods for cytometry"!
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Lab picnic!
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Congratulations to Dr. Faezeh Bayat for successfully defending her PhD thesis, "Variance-stabilized signals for biological data"!
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#IEEE_TMI paper DEEMD: Drug Efficacy Estimation against #SARSCoV2 based on cell Morphology with Deep Multiple Instance Learning PDF 📰 i.sfu.ca/yFsJPL Code 💽 i.sfu.ca/DReJKS #MedicalImageAnalysis #DeepLearning #COVID19 @SFU_CompSci @NabiRobert @LabLibbrecht
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Maxwell Libbrecht has joined our Editorial Board, and will be handling papers in our Genomics section! You can find out more about Max's research here: plos.io/3LLuoJb

Libbrecht Lab

Contact: Email: [email protected] Office: TASC 1 9219, SFU Burnaby campus

sites.google.com
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Long-overdue lab research summary page! sites.google.com/view/libbre…

Libbrecht Lab - Research

Our group develops and applies machine learning tools that uncover the genotype-phenotype relationship—that is, that determine the relationship between the sequence of DNA base pairs that makes up an...

sites.google.com
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Lab social! (Sept 16 2021)
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I'm honored to have been selected for the Michael Smith Scholar award -- thank you, @msfhr! msfhr.org/1/news_article/ena…
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