@OpenBehavior

OpenBehavior provides a centralized repository of open-source tools specific for behavioral neuroscience research [email protected]

 The Internet
edspace.american.edu/openbehavior/
Joined September 2016
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Excited to share another #opensource tool from the lab! We have been using this set up to do awake head-fixed scans without the need for any anesthesia on the day of the scans! Now working on integrating licking behaviour and linear treadmill operandum! @OpenBehavior
bioRxiv Neuroscience@biorxiv_neursci20 Oct 2025
A simple, open-source restraint system for magnetic resonance imaging in awake rats biorxiv.org/content/10.1101/… #biorxiv_neursci

A simple, open-source restraint system for magnetic resonance imaging in awake rats

Magnetic resonance imaging (MRI) is a critical tool for translational neuroscience, offering cross-species insights into brain structure and function; however, its application in preclinical research...

biorxiv.org
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OpenBehavior@OpenBehavior3 Oct 2025
If you have a project that you would like us to post about, please reach out to us at [email protected].
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OpenBehavior@OpenBehavior3 Oct 2025
We will be posting less frequently going forward. Funding for our project from the NSF has completed. We will proceed as we first did with this project, with a more grass roots approach involving undergraduates at American University in creating content for our website.
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OpenBehavior@OpenBehavior3 Oct 2025
This month's post was written by Ellie Blumer, a second-year neuroscience major and computer science minor at American University.
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OpenBehavior@OpenBehavior3 Oct 2025
DeepOF (Deep Open Field) processes DeepLabCut/SLEAP data using supervised and unsupervised annotation pipelines and using SHAP for interpretability. Read about it in this month's post on OpenBehavior: edspace.american.edu/openbeh… #OpenSource #Neuroscience #DeepLearning
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The Neuroscience Dept at American University is hiring for a tenure-track position at the Assistant level and with expertise in Computational Neuroscience. Apply by Sep 15: american.wd1.myworkdayjobs.c… #FacultyJobs #AcademicJob #Neuroscience #CompNeuro #AI #ComputationalPsychiatry
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Pre-print alert: The Crunchometer is a low-cost, open-source technology that uses bite sound to democratize the microstructural analysis of feeding bouts on solid food The Crunchometer: A Low-Cost, Open-Source Acoustic Analysis of Feeding Microstructure biorxiv.org/content/10.1101/…

The Crunchometer: A Low-Cost, Open-Source Acoustic Analysis of Feeding Microstructure

Elucidating the neuronal circuits that govern appetite requires a detailed analysis of the microstructure of solid food consumption. A significant barrier in this field is that existing techniques...

biorxiv.org
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OpenBehavior retweeted
Bing Ye
@byneuron31 Jul 2025
🧵 I’m excited to announce that the 2025 LabGym Symposium & Tutorial will be held online via Zoom on Friday, August 22, 2025. Don’t miss this opportunity to learn about cutting-edge AI-based behavioral analysis! lsi.umich.edu/events/2025-08… 1/

LabGym Symposium

LabGym is a free software suite for automated video analysis and quantification of animal behavior. LabGym has now been downloaded over 55,000 times from GitHub in just about two years. The 2024...

lsi.umich.edu
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OpenBehavior@OpenBehavior25 Jul 2025
Getting advanced video analysis tools like SLEAP, DeepEthogram, and A-SOID to work can be tricky! Our team figured out some key steps and fixes. Check out our detailed setup guide: edspace.american.edu/openbeh… #OpenScience #Neuroscience
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OpenBehavior@OpenBehavior18 Jul 2025
What's hot in open-source neuroscience for 2025? This week's post on OpenBehavior reviews projects of interest to the followers of our blog in the first half of 2025. Check it out: edspace.american.edu/openbeh… #opensource #neuroscience
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#eNeuro | Adapt-A-Maze: An Open-Source Adaptable and Automated Rodent Behavior Maze System doi.org/10.1523/ENEURO.0138-…

Adapt-A-Maze: An Open-Source Adaptable and Automated Rodent Behavior Maze System

Mazes are a fundamental and widespread tool in behavior and systems neuroscience research in rodents, especially in spatial navigation and spatial memory investigations in ad libitum behaving...

eneuro.org
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OpenBehavior@OpenBehavior11 Jul 2025
Ray Shen, a student at the University of Maryland, developed the program as part of summer research with the OB team. You can access his code here: github.com/LaubachLab/ArUco-…

GitHub - LaubachLab/ArUco-tracker: A Python program using OpenCV for offline analysis of ArUco...

A Python program using OpenCV for offline analysis of ArUco markers recorded Bonsai - LaubachLab/ArUco-tracker

github.com
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OpenBehavior@OpenBehavior11 Jul 2025
Real-time ArUco tracking is available in Bonsai but has some limitations. The OB team developed a Python/OpenCV program for robust offline analysis, that provides full position and rotation information. Read about it in this week's post: edspace.american.edu/openbeh… #Neuroscience
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OpenBehavior@OpenBehavior27 Jun 2025
Thomas Akam (U Oxford) developed an active commutator that auto-rotates to prevent twisting of cables for neural recordings from freely moving subjects. Read about it in this week's post on OpenBehavior. #Electrophysiology #OpenScience #Neuroscience edspace.american.edu/openbeh…
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OpenBehavior@OpenBehavior20 Jun 2025
Design files for the Arduino counter are available on the Laubach Lab's GitHub at github.com/LaubachLab/arduin…

GitHub - LaubachLab/arduino_counter: A simple device for displaying trial number in video recordi...

A simple device for displaying trial number in video recordings of operant experiments - LaubachLab/arduino_counter

github.com
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OpenBehavior@OpenBehavior20 Jun 2025
Our latest post highlights a simple, open-source #Arduino device developed by Jason Blackmer from the Laubach Lab that displays trial numbers in your video recordings. It makes finding trials a breeze! edspace.american.edu/openbeh… #OpenScience #Neuroscience #LabHacks
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OpenBehavior@OpenBehavior13 Jun 2025
This week's post on OpenBehavior reviews available #opensource tools for imaging, including for microscopy, calcium imaging, and integrating behavior with imaging. From UCLA Miniscope to PyPhotometry, see what's making an impact! 👇 #Neuroscience edspace.american.edu/openbeh…
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OpenBehavior@OpenBehavior6 Jun 2025
This week's post on OpenBehavior reviews our posts over the years on #opensource tools for neural recordings & analysis, including a motorized swivel, Pynapple, & Open Ephys. #Neuroscience #Electrophysiology #OpenScience edspace.american.edu/openbeh…
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OpenBehavior@OpenBehavior23 May 2025
Researchers have developed a chronic EMG implant for the diaphragm in freely behaving rats. It is low-cost, quick to build, and fully documented. Read about it in this week's post on OpenBehavior. @streeter_kristi @LabDale #opensource #neuroscience edspace.american.edu/openbeh…
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OpenBehavior@OpenBehavior16 May 2025
This summer, we're working on documenting setups and protocols for using popular tools such as SLEAP, Bonsai, & ArUco marker tracking. You can read about our plans in this week's post and stay tuned for updates over the summer! #OpenScience #Neuroscience edspace.american.edu/openbeh…
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