RSAT retweeted
The #footprintDB collection of transcription factors, motifs and regulatory sequences has just been updated, see release notes here: bioinfoperl.blogspot.com/202… @RSATools @jaspar_db
RSAT retweeted
Three new plant genomes added to @RSATools from @ensemblgenomes and the @NCBI:
Hordeum_vulgare.MorexV3
Lupinus_albus.CNRS_Lalb_10
Lupinus_albus.La_Amiga31
You can now use them to analyze regulatory sequences at plants.rsat.eu , enjoy!
RSAT retweeted
1) Today's been a hell of a day for plant #pangenomes.
In nature.com/articles/s41586-0… Walkowiak et al analyze up to 16 wheat cultivars to report on the global variation pool accessible to modern breeding
RSAT retweeted
We have released bwa-mem2 v2.1 in which we address the main feedback that index of the reference was too big. The index size on disk is down by 8x and in memory by 4x with no impact on read mapping speed. #bwa-mem2 #bwamem2 #bwamem @lh3lh3 @wasim_galaxy github.com/bwa-mem2/bwa-mem2…
RSAT retweeted
If you're organising a virtual meeting and think it could benefit from being live-illustrated get in touch atjcagan.squarespace.com/#/c… #scicomm #sciart
RSAT retweeted
The latest work by Najla Ksouri @EEAD_CSIC @RSATools on discovering regulatory motifs in proximal promoters of plants is now live on @biorxivpreprint
Thoughts and comments welcome
biorxiv.org/content/10.1101/…
RSAT retweeted
Today we added Brachypodium stacei from @phytozome to plants.rsat.eu @RSATools @EEAD_CSIC @ARAID_ES @dianalopez430 diana
RSAT retweeted
Mis notas sobre cómo agregar @travisci a tu repositorio @github para validar tu código y sus dependencias cuando haces actualizaciones: bioinfoperl.blogspot.com/202…
@RSATools @pvinmex
RSAT retweeted
#footprintdb has been updated and interface residues from 3d-footprint annotated. Check it out at floresta.eead.csic.es/footpr…
Web service example: bioinfoperl.blogspot.com/201…
@RSATools @EEAD_CSIC @ARAID_ES
RSAT retweeted
Arriving to @BSC_CNS thanks to a Severo Ochoa Mobility Grant. I'll be around for two weeks and will also be participating in the #AdvCompBio conference.
RSAT retweeted
For those interested in the software, the program is matrix-clustering from @RSATools , you can find the paper here: doi.org/10.1093/nar/gkx314
RSAT retweeted
Seeing some famous rejections shared today, here's one that @BenLangmead and I had, from @naturemethods in 2008, who rejected our paper on Bowtie. @GenomeBiology accepted it afterwards, and it now has nearly 15,000 citations. I include part of Reviewer2's negative comments.
RSAT retweeted
After a few months floresta.eead.csic.es/3dfoot… is again up-to-date with @RSATools @rcsbPDB @PDBeurope contents. See current stats at floresta.eead.csic.es/3dfoot…
RSAT retweeted
Teshome Dagne Mulugeta, who visited us at @EEAD_CSIC @ARAID_ES @RSATools , has just published his paper describing his work on salmon regulatory sequences salmobase.org/apps/SalMotifD…
bmcgenomics.biomedcentral.co…
RSAT retweeted
Today @josschavezf1 presented #regutools which is an #rstats 📦 for interacting with RegulonDB from @ccg_unam and with @RSATools 🙌🏽
💻 Code at github.com/ComunidadBioInfo/… by @CDSBMexico
#bioc2019
RSAT retweeted
#footprintdb has been updated and interface residues from 3d-footprint annotated. Check it out at floresta.eead.csic.es/footpr…
@RSATools @EEAD_CSIC
RSAT retweeted
This week we had @mthomaschollier at @LIIGH_UNAM sharing about her work developing tools, some available in @RSATools , to treat and analyze novel NGS data to understand #GeneRegulation
RSAT retweeted
Open position for PhD student !! The project aims to develop bioinformatic tools to analyze regulatory sequences under the @RSATools project!
Come do your PhD at @LIIGH_UNAM !!
#rstats #Bioinformatics #perl #python #Genomics #phdlife
RSAT retweeted
@AleMedinaRivera walks us through the past, present and future of @RSATools , which is 20 years old now.
