@SysBioCurie

Computational Systems Biology of Cancer team @institut_curie Visit our github https://xitter.cf/t.co/kpVShA4zSW

institut-curie.org/team/barillot
Joined January 2016
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One more milestone for the #PhysiCell community: we’re thrilled to announce our latest publication in Briefings in Bioinformatics - "Building Multiscale Models with #PhysiBoSS, an Agent-Based Modeling Tool" 🧬📊 Check out the full article here: academic.oup.com/bib/article… (1/6)

Building multiscale models with PhysiBoSS, an agent-based modeling tool

Abstract. Multiscale models provide a unique tool for analyzing complex processes that study events occurring at different scales across space and time. In

academic.oup.com
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Around a year later, we are proud to announce that PhysiMeSS has been published in the #PhysiCell ecosystem section of @GigaByteJournal: gigabytejournal.com/articles…. Very proud of our work @CicelyKrystyna, @MRuscone, @robynshutt !

PhysiMeSS - a new physiCell addon for extracellular matrix modelling

PhysiMeSS - a new physiCell addon for extracellular matrix modelling

gigabytejournal.com
Vincent Noël (@vincent-noel.fr on BlueSky)@vincentnoel7228 Oct 2023
We're very happy to announce that the preprint for #PhysiMeSS, our PhysiCell addon for Extracellular Matrix Modelling, is out ! PhysiMeSS is a collaborative project led by @CicelyKrystyna, that I joined a year ago to package it as an official @PhysiCell addon.
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🧵 I am happy to introduce NeKo🐱, a Python package to automate the construction of biological networks from prior knowledge, reducing the manual curation burden! 🚀 Check the preprint and let us know what you think! biorxiv.org/content/10.1101/… #Bioinformatics #NetworkBiology #Python

NeKo: a tool for automatic network construction from prior knowledge

Biological networks provide a structured framework for analyzing the dynamic interplay and interactions between molecular entities, facilitating deeper insights into cellular functions and biological...

biorxiv.org
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Back to back presentations of PhysiCell and PhysiBoSS at @SysBioCurie course @institut_curie! Great to see you this side of the ocean!
Paul Macklin@MathCancer2 Oct 2024
.@ArnauMontagud : PhysiBoSS is a project that can only happen because of #OpenSource!! YES!!!!! @PhysiCell is really meeting its potential with this amazing community. @IUImpact @IULuddy
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Very happy to present today PhysiBoSS 2.0 at @ECCBinfo in beautiful Turku! One more step towards having human digital twins from @SysBioCurie @institut_curie, @Alfons_Valencia @BSC_CNS and @i2sysbio. More info on the paper here: nature.com/articles/s41540-0…
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After a long time, a lot of hard work, and equal amounts of enthusiasm, RDA has endorsed our WG for Building Immune Digital Twins! We are ready to embark on a two-year journey to bring some exciting deliverables to life. Would you like to join us? rd-alliance.org/groups/build…
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The Federal University of Rio de Janeiro @ufrj is organising an international course on systems biology this october! I'll be participating, giving a lecture on how to build multiscale models with PhysiBoSS. Still one week to register 👉 even3.com.br/v-sysbiorio/. Don't miss it! – at Sao Paulo, Brazil
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Our #PhysiBoSS tutorial is finally available as a preprint: arxiv.org/abs/2406.18371! Learn how to build #multiscale models with #Boolean intracellular signaling, without any code, using #PhysiCell Studio. Showing 3 simple examples, and an update of @MRuscone invasion model 👇
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Exciting Opportunity at the Center for Computational Biology! We're hiring a Junior Professor Chair in Bioinformatics/Computational Biology: "Artificial Intelligence for Digital Health." Competitive startup package & a path to full professorship in 3-6 years.
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🎓 Registration for the 7th Course on Computational Systems Biology of Cancer "Spatial multimodal data analysis: when omics meet images" at @institut_curie is still open! ⏳ Registration deadline: June 30th, 2024 ✍️ Program & registrations: training.institut-curie.org/…
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The 7th edition of the International Curie Course on Computational System Biology of Cancer is open for registrations. This edition will particularly focus on spatial multimodal analysis. training.institut-curie.org/… – at Paris, France
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Remember to get in touch soon if interested (by the end of next week at the latest!) Excellent PhD opportunity for deep learning project in bioinformatics and oncology. @BSC_CNS @BU_CNIO @SysBioCurie @LauCan88 @CareGraduate @InfinityTLS @RestoreInstitut
Vera Pancaldi verapancaldi.bsky.social@VeraPancaldi3 Jun 2024
Exciting opportunity @crctoncopole and @ErikDassi for a deep learning/bioinformatics project on translational control, we are looking for candidates to apply for @UT3PaulSabatier scholarship, get in touch by the end of this week if interested!
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What a blessing it is to welcome such a great audience and team of speakers, gathered in Paris for the #CurieSymposium! Immunologists, chemists, chemical biologists, clinicians… We’re so pleased to spend these 3 days of enriching and impactful scientific discussions with you! 🤝
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⏰ 10 days to go for the #CurieSymposium! Join a wide range of internationally renowned experts in a interdisciplinary setting at @Maison_Chimie and delve into the latest discoveries from basic science to #CancerResearch. Secure your spot now on: curiesymposium.fr/registrati…
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SysBioCurie retweeted
Paul Macklin@MathCancer1 May 2024
@gaLLetort it was such an honor to share recent work at @institut_curie yesterday, as well as to finally meet! Thank you for kicking off what had become and amazing research coalition!! @institut_curie + @BSC_CNS + @IULuddy makes quite a team! @IUImpact #mathonco
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SysBioCurie retweeted
Paul Macklin@MathCancer1 May 2024
It was my great pleasure to join @MRuscone's PhD defense at @institut_curie yesterday! Only had 50 hours on the ground, but the science and collaboration were worth every second of travel! Congratulations, Dr. Ruscone! #mathonco – at Le Mesnil-Amelot, France
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Yesterday I had the immense pleasure to see @MRuscone defend his PhD. Thanks for everything Marco, I'm really proud of the work we got to do together with Laurence. We couldn't have done it without you. You'll do great in research, I have no doubt. I wish you all the best!
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Hinxton campus for our @eventsWCS course on CompSysBio! This year again we have an amazing cohort of participants from all around the globe, a dream team of trainers and super keynote speakers!
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We are looking for a new computational biologist Postdoctoral Fellow interested in deciphering pediatric brain treatment resistance to join my lab @institut_curie St-Cloud/Paris #Bioinformatics institut-curie.org/offre-emp… (Please RT)
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📢 Exciting news! We’re opening two PhD positions at @i2sysbio @CSIC, in research projects in collaboration with the @BSC_CNS. Both of them are related to tools to simulate biological tissues. Here’s a sneak peek into what each role entails. #phdpositions #phdopportunities
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