@alexomics

welcome to my website. i'm the one on the left.

 At least 2m away from you
github.com/alexomics
Joined April 2017
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3Media
We've put out a short preprint today showing some updates in Readfish for @nanopore adaptive sampling. biorxiv.org/content/10.1101/… @alexomics is giving a talk shortly at the #nanoporeconf about this - but a short thread here.
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Barcode aware adaptive sampling for Oxford Nanopore sequencers. biorxiv.org/cgi/content/shor… #bioRxiv
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DNA SEQUENCING: Complex targeted sequencing in real time go.nature.com/3rSXVbe #ResearchHighlight
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If you haven't already, check out this super cool paper from @alexomics and team, describing their new adaptive sampling toolkit Readfish — for enriching targeted panels in human genomic and metagenomic samples: bit.ly/2VVnr0F
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So - our ReadFish paper came out on Monday nature.com/articles/s41587-0… using GPU - but what if you only have a laptop? Here's an update from @alexomics to our tools that enable ReadFish on Mac, Linux or Windows with no additional GPU or compute. looselab.github.io/2020/12/0… for details.
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Very happy to share our work on selective sequencing use the @nanopore MinION. Code is here: github.com/LooseLab/readfish and the paper is here: nature.com/articles/s41587-0…

GitHub - LooseLab/readfish: CLI tool for flexible and fast adaptive sampling on ONT sequencers

CLI tool for flexible and fast adaptive sampling on ONT sequencers - LooseLab/readfish

github.com
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BioRxiv preprint on selective sequencing with @nanopore sequencers. biorxiv.org/content/10.1101/…. #phdchat #AcademicChatter

Nanopore adaptive sequencing for mixed samples, whole exome capture and targeted panels

Nanopore sequencers enable selective sequencing of single molecules in real time by individually reversing the voltage across specific nanopores. Thus DNA molecules can be rejected and replaced with...

biorxiv.org
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