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Chloé Baum

@ch_baum

Find me on bluesky: https://nitter.gq/t.co/Eg7xBH3aFu

 Paris, France
research.pasteur.fr/en/member/chloe-baum/
Joined May 2019
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Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)Photo by Chloé Baum (@ch_baum)
This will be my last post here. You can find me on bluesky: @chloebaum.bsky.social See you there!
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🔥 Je viens de reconnecter 24 contacts de #X sur BlueSky/Mastodon ! Exercez votre droit à la portabilité avec #OpenPortability 🎯 0 nouveaux abonnés ➡️ OpenPortability.org openportability.org/
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Chloé Baum retweeted
Ryan Wick (@rrwick) profile picture
Ryan Wick@rrwick31 Dec 2024
New year, new assemblies! I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes! It's the successor to Trycycler, designed to be faster and less reliant on user intervention. Check it out: github.com/rrwick/Autocycler… (1/5)
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A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler

github.com
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Thrilled to finally meet the brand new Illumina MiSeq i100 series in Paris @Genopole ! @illumina @BiomicsPasteur
Image from Clément Tanvet (@ClementTanvet)
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Chloé Baum retweeted
Ryan Wick (@rrwick) profile picture
Ryan Wick@rrwick31 Jul 2024
I finally got around to testing HERRO (github.com/lbcb-sci/herro), the new @nanopore read correction algorithm which takes simplex ONT reads to PacBio-HiFi-level accuracy. I was impressed! Findings are on my blog in a two-part post: rrwick.github.io/2024/07/26/… rrwick.github.io/2024/07/31/…
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Always a pleasure to meet and exchange around current sequencing technologies !
France Génomique (@fr_genomics) profile pictureFrance Génomique@fr_genomics20 Jun 2024
Another annual general meeting over for France Genomique ! 144 attendees from 27 platforms came to Evry, and visited the @seqlab and the CNRGH @CEA_Jacob_ Thank you everyone👍
Image from France Génomique (@fr_genomics)
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A slide is worth a thousand words. At #ASMicrobe, @rrwick shared a fantastic presentation 'In Pursuit of Perfection, bacterial genome assembly from 2016 to today', including this recent Klebsiella isolate genome assembly of 99.99995% identity (Q63.0) using @nanopore data alone
Image from Aaron Pomerantz, PhD (@AaronPomerantz)
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Fantastic and entertaining presentation from Marc Monot @BiomicsPasteur about their @nanopore workflow! Got some really good ideas! #C4LGenomics
Image from catharine.aquino (@CatharineAquino)
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I am looking for a highly motivated PhD student to join my team to work on the broad field of microbial epigenomics. Please RT! abg.asso.fr/en/candidatOffre…
Image from Pedro H Oliveira (@pholive81)
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The @seqlab Genoscope @CEA_Jacob_ is looking for a highly motivated Ph.D. candidate to work in microbial epigenomics (bioinfo + wet lab). The funding is readily available and start date is envisaged to be around Sept/Oct 2024. abg.asso.fr/en/candidatOffre…
Image from France Génomique (@fr_genomics)
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That’s a wrap for #nanoporeconf ! These were 2 days of innovating science, updates and great connections. A pleasure as always! Thanks London Calling @nanopore
Image from Chloé Baum (@ch_baum)
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Exciting sequencing times ahead ! 🧬
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Chloé Baum retweeted
Ewan Birney (@ewanbirney) profile picture
Ewan Birney@ewanbirney23 May 2024
After some different iterations, this true thumb drive DNA sequencer is getting scheduled into production ("MinION MkII" I think its offical moniker). The form factor is ...small. The chemistry is "standard ONT". Metagenomics/infectious agent identification anywhere, fast!
Keith Robison (@OmicsOmicsBlog) profile pictureKeith Robison@OmicsOmicsBlog23 May 2024
SmidgION, capable of generating more sequence data in a few days than existed in entire world at the turn of the century, resting on my pinkie #nanoporeconf
Image from Keith Robison (@OmicsOmicsBlog)
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Spectacular talk by @ClarksysCorner @UniMelb demonstrating how "@nanopore sequencing 🧬can successfully identify cell types using only #longread sequencing 💻" & scRNA-seq identifies isoform trajectories in #brain development🧠" #nanoporeconf
Image from Dessi Veltcheva (@DessiVeltch)
Image from Dessi Veltcheva (@DessiVeltch)
Image from Dessi Veltcheva (@DessiVeltch)
Image from Dessi Veltcheva (@DessiVeltch)
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Delighted to present my poster on the different ONT activities of @BiomicsPasteur. Come check it out, I’ll be happy to connect and discuss! ☺️ Poster 32. #nanoporeconf @nanopore
Image from Chloé Baum (@ch_baum)
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Very inspiring talk by @CarikaElshae on setting up the very first ONT platform in Bermuda. Allowing breast cancer genetics testing and novel variants detection, leading the path to more therapeutic opportunities. #nanoporeconf @nanopore
Image from Chloé Baum (@ch_baum)
Image from Chloé Baum (@ch_baum)
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Day 2 starting now ! @nanopore announcing more workflow stability and more customer support. #nanoporeconf
Image from Chloé Baum (@ch_baum)
Image from Chloé Baum (@ch_baum)
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Replying to @AlbertVilella @nanopore
The announcement of v5 models already happened yesterday: transformer models (same as ChatGPT) with sup-v5 now getting simplex Q25-26.0. Already released in dorado.
Image from Albert Vilella (@AlbertVilella)
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Pumped up for @The__Taybor and the tech updates ! Not forgetting the traditional glass of champagne ✨ #nanoporeconf
Image from Chloé Baum (@ch_baum)
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Very excited about the native RNA sequencing session starting now at LC24 #nanoporeconf
Image from Adrien Leger (@AdrienLeger2)
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