Group leader at UNSW Sydney π¦. Single cell biologist, open source developer, diversity aficionado, rock climber, and Nella's papa π
Sydney, New South Wales
Joined June 2018
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igraph preprint:
arxiv.org/abs/2311.10260
17 yrs of open source network analysis for all π¦
Many, many thanks to all contributors and co-authors. It's a blast devving with you folks πππ
and also btw our paper in collab with the Einav lab on severe dengue progression in children is on Nature Immunology's website now nature.com/articles/s41590-0β¦
btw atlasapprox.org/ is live. Single-cell, whole-body cell atlases across the tree of life at your fingertips.
Finally get marker genes for the cell type you dig in 1.2 seconds: "What are 10 markers of AT2 in human lung?"
Powered by our awesome atlas approximations.
Proud to receive a CZI #SingleCell data insight grant to build light and scalable approximations of cell atlases! Standardized, easy & fast (subsecond) access to atlas data across cell types, organs & organisms, free & open source, to anyone in the π! atlasapprox.readthedocs.io/
Scientists are using existing #SingleCell data to uncover new insights into health + disease.
Meet some of the researchers who are developing new computational tools & methods to process, analyze and understand this valuable data ππΏππ½ππ» czi.co/3K1mtJ4
Proud to share our latest work with the @EinavShirit lab shedding π¦ on severe dengue with single cell resolution! π¬π»π§¬π¦ π¦ Those virus-harbouring B cells are just crazy... Well done everyone!! πΎπ₯
biorxiv.org/content/10.1101/β¦
In the same patients, cell substype and cell state abundances are altered in an intriguing way: almost no non-classical monocytes are found, while atypical immunoregulatory twins of killer NK and T cells emerge and likely flood the system with the wrong cytokines.
Heyo! We have an open position for a PhD student in computational biology for a super exciting project on "Evolutionary machine learning with cell atlases". Single cell data compression + machine learning models informed by evolution + Python fuπ§¬π»π₯ fabilab.org
Fabio Zanini retweeted
We obviously will no longer ask our editors to evaluate submissions for their suitability for eLife prior to peer review, as "suitable for eLife" no longer means anything.
theguardian.com/lifeandstyle⦠yes dengue infects white people too, dear funding agencies. Turns out viruses are less racist than ourselves
Please retweet π: Looking for a mixed computational/experimental PhD student in single cell biomedicine on neonatal lung disease and bluebottle jellyfish π¬β¨οΈ - lab website fabilab.org - email me CV, motivation letter, and a coding sample. Oh and Nella is here ππ
The Australian Research Council (ARC), which funds virtually all non-medical research in Oz, decided that citing a preprint in a funding application disqualifies it. ππ Minister: preprints are essential tools of modern science! Sign here: docs.google.com/forms/d/e/1Fβ¦
Looking for a postdoc in single cell data science, esp. on cancer and induced stem cells, co-advised with John Pimanda here in sunny Sydney. β¨οΈππ If you think every cell should have a voice and are a proficient Python or R coder, shoot me an email: fabilab.org (1/2)
Open position: PhD student in single cell computational biology (Sydney)
We are looking for a passionate PhD candidate to establish a standard model of cell biology based on single cell transcriptomics data. Network analysis + data science πβ¨οΈπ
Info at fabilab.org/pages/jointhelabβ¦
If this is not cool then nothing is frontiersin.org/articles/10.β¦
Invasion day, on which a bunch of Europeans on a ship decided Country was for them to "conquer". As a recent European immigrant, I am baffled this is a day of celebration, just imagine how it must feel for our Aboriginal friends and colleagues... π β
Deeply moving diary of an Uighur mother π theguardian.com/world/2021/jβ¦
Fabio Zanini retweeted
You know you need some #goodnews today! Join us to recognize outstanding research parasites & symbionts today at 4pm Eastern/3pm Central: youtube.com/c/CaseyGreene/liβ¦
@GreeneScientist @thebyrdlab @fabiousername @Kelley__Harris
