FASTQ + Emoji = FASTQE 🤔 FASTQ, FASTA, VCF + Emoji = biomojify 😀
Joined July 2018
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FASTQ + Emoji = FASTQE 🤔
Compute quality stats for FASTQ files and print those stats as emoji... for some reason. fastqe.com/ Contributions welcome. This really isn’t as silly an idea as it sounds.
✅ FASTQE
✅ NGS
✅ Single cell
✅ Proteomics
✅ Transcriptomics
The Galaxy Smörgasbord has it all!
Sign up to learn how to #usegalaxy to analyse your data with support from a global network of trainers including the friendly @GalaxyAustralia team
gxy.io/smorgasbord3
Hmmm... would you consider funding *inessential* open source software @cziscience ? Need some help with these 'ere emoji 😀
🗣Now open 🗣
@CZIScience’s funding opportunity for the fifth cycle of Essential #OpenSource Software for Science.
Learn more and apply for this RFA: czi.co/OpenSourceSoftwareRFA
Glorious! Such a great idea, will need to do a Python version to add to biomojify!
github.com/fastqe/biomojify
As per @jomcinerney's request, I wrote a second Lua script that converts protein alignments (clustal format) into emoji alignments. Same codex as before, now with interesting datavis! Code is commented and easy to follow. Link here: github.com/Binomica-Labs/BLS…
#diybio #datavis #lua
FASTQE retweeted
Excited for my @CyVerseOrg webinar this Friday! Focus will be on a fun, intro level coding NGS analysis activity for students using Emoji 🤩💩😻 @fastqe
Novice-level students & educators welcome! Free registration here:
cyverse.org/webinar-NGS-QC
Our final #webinar of the spring season is this Friday!
Both #students and #educators should join us for NextGen Sequencing Analysis with Emojis and CyVerse, a fun demo presented by @Enke_Lab: cyverse.org/webinar-NGS-QC
#NSFfunded #DataScience #Genomics #eLearning #DataAnalytics
FASTQE retweeted
Congratulations @Enke_Lab - approachable sequence analysis for undergraduates using @CyVerseOrg - this CourseSource publication is ready for teachers to use!
"A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!"
coursesource.org/courses/a-f…
'Tis the season.... to biomojify your FASTA sequences!
$ biomojify fasta --custom christmas.dict.txt dna.fasta
▶️DNA
🎁🎁🎅🎄🎄🎄🎄🎅🎅😇😇🎁😇😇🎅😇😇🎄😇🎁🎄🎁🎄🎄🎅🎄🎅🎅🎄😇😇🎅😇😇😇🎅😇🎄🎄🎅🎁🎄🎄🎅🎅
github.com/fastqe/biomojify
FASTQE retweeted
Presenting my contribution to #ScienceWeek 2020 that nobody asked for:
SuperMarioBio - watch as Mario collects mRNA to translate into protein!
Video: youtu.be/fGH0dfkfPY0
Thanks to everyone who watched the FASTQE talk at #BCC2020 #BOSC2020 "Please contribute to FASTQE so I don't have to" and for all the feedback. A special thanks to those who answered the call and stayed around for the CoFest. bcc2020.sched.com/event/csrC… 1/n
Issues can be logged on GitHub, feedback by Twitter or discussion on Gitter.
biomojify has been developed rapidly thanks to the Bionitio tool for scaffolding best practices for bioinformatics command-line software:
academic.oup.com/gigascience…
9/n