#OpenSource tools to collect, describe & publish life, environmental, biomedical experiments with community standards; part of @ELIXIREurope enabling #FAIRdata
University of Oxford, UK
Joined May 2010
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ISA Metadata Toolkit retweeted
📣Call for Experts
The Multi-Omics Metadata Standards Working Group is seeking a software and web developer to develop their Landscape Dashboard into an interactive, web-based tool.
Sounds like you? Learn more and apply: ow.ly/NFKb50TQstv @lnanderscience @FAIRsharing_org
ISA Metadata Toolkit retweeted
Highlighting @ralf_weber of @unibirmingham on #metabolomics & #multiomics data integration; and @Phil_at_OeRC of @OxfordeResearch on #MetadataManager tool & #FAIRdata with @isatools, testing #DataBrokering to EBI databases with #ISAJSON (github.com/elixir-europe/bio…) #PrecisionToxACM
ISA Metadata Toolkit retweeted
Philippe Rocca-Serra on latest advances with @isatools and the planned #BioHackathon project using #ISAJSON for #multiomics data brokering #ELIXIR24
ISA Metadata Toolkit retweeted
This #Biohackathon2024 “MARS multiomics brokering project” with @isatools and many #ISAJSON producing tools and platforms gets also highlighted by Flora D’Anna @ELIXIRnodeBE in the #ELIXIRDataPlatform session at #ELIXIR24
Well done to all selected projectl!! Spotlight on the “Project 23: MARS: Multi-omics Adapter for Repository Submissions, preparing for launch” by Bert Droesbeke, Philippe Rocca-Serra @Phil_at_OeRC with #ISAJSON and more at github.com/elixir-europe/bio… #ELIXIR24
ISA Metadata Toolkit retweeted
Yeah! Well done to al selected projectl!! Spotlight on “Project 23: MARS: Multi-omics Adapter for Repository Submissions, preparing for launch” by Bert Droesbeke, Philippe Rocca-Serra @Phil_at_OeRC with @isatools and more at github.com/elixir-europe/bio…! #ELIXIR24
ISA Metadata Toolkit retweeted
Our @Phil_at_OeRC is at #swat4ls to present tomorrow the @ELIXIREurope #FAIRcookbook from an industry prospective. Also great to see community work progresses around the widely adopted @isatools with mapping to #DCAT and #FHIR standard models 😜 #omics #interoperability #FAIRdata
ISA Metadata Toolkit retweeted
Our @OxfordeResearch #DataReadiness funded under the @ELIXIREurope #Interoperability platform for activities encompassing @isatools @FAIRsharing_org and the #FAIRcookbook to enable #FAIRdata ⬇️
🙌 ELIXIR has launched 8 projects (Commissioned Services) addressing the scientific and technological ambitions 🔬 of its new Scientific Programme for 2024 to 2028 and connecting experts in ELIXIR Nodes 🌍.
Read the news 👉 elixir-europe.org/news/new-p…
ISA Metadata Toolkit retweeted
Great example published @GigaScience on the use of @isatools and #ROcrate to achieve #FAIRdata ➡️ doi.org/10.1093/gigascience/… #omics #reproducibility #opendata - @ELIXIREurope @ElixirNodeUk
ISA Metadata Toolkit retweeted
Thank to @Phil_at_OeRC for contributing to @isatools and related #metadata #FAIRdata related activities at the @ELIXIREurope #BioHackEU23 !! ⬇️
🎉Thank you all for joining #BioHackEU23! A special thanks to our online and overseas participants 🙌 staying up late hacking through different projects with us.
👏It has been a great week!! And we look forward to seeing you next year for #BioHackEU24!🥳
ISA Metadata Toolkit retweeted
Deep dive of the @nfdi4plants @FAIR_agro cross consortium task force agreed on a roadmap and pipeline to implement a cross consortium infrastructure and deliver integrated #FAIR digital objects that features #ROcrate @isatools #StateOfTheARC #sciwin
ISA Metadata Toolkit retweeted
SODAR: managing multiomics study data and metadata.
Provides a web-based graphical user interface for managing multiassay studies and describing them using the @isatools data model and the ISA-Tab file format. doi.org/10.1093/gigascience/…
ISA Metadata Toolkit retweeted
Kasthuri Venkateswaran @NASAJPL on microscopic entities key to #astrobiology, astronaut health, maintenance of space habitats, and planet protection. Omics datasets accessible on NASA's GeneLab platform (doi.org/10.1093%2Fnar%2Fgkaa…) are structured in @isatools metadata format #gsc23
ISA Metadata Toolkit retweeted
The @ELIXIREurope 2022 report showcases the achievements of over 800 experts from 22 ELIXIR Nodes including our Centre’s Data Readiness group, who have developed @FAIRsharing_org, the @isatools, and the FAIR Cookbook resources for the #LifeSciences oerc.ox.ac.uk/news/fairshari…
ISA Metadata Toolkit retweeted
Fantastic news for @ElixirNodeUk - #BioFAIR will ensure that #FAIRdata good #ResearchDataManagement #RDM #openscience #reproducibility become a reality! Watch this space …
📣 @UKRI_News have awarded £34 million funding for the @ElixirNodeUk conceived
@BioFAIRUK, a digital infrastructure to support UK research in the life sciences. BioFAIR will bring ELIXIR & resources (co)led by Centre’s Data Readiness Group
oerc.ox.ac.uk/news/uk-resear…
@FAIRsharing_org
ALT BioFAIR logo
ISA Metadata Toolkit retweeted
Many thanks to @SusannaASansone and @Phil_at_OeRC for hosting us for the past two days. Very productive meeting!
ISA Metadata Toolkit retweeted
Brilliant 2 days with @ralf_weber & Martin Jones from @unibirmingham + @Terazus at @OxfordeResearch. Study design, randomization, metadata multi-omics-from planning to deposition #FAIRdata to @emblebi archives! @MetaboLights @ENASequence supporting @isatools for @PrecisionTox
ISA Metadata Toolkit retweeted
Great talk on #ROcrate and example of use of @isatools (both @ELIXIREurope resources!) by @justincc - this is packaged and structured data and metadata that is #FAIRbyDesign #eoscsymposium22 #eoscsymposium2022
ISA Metadata Toolkit retweeted
Have also fun! Our @Phil_at_OeRC represents our team contributing to #FAIRcookbook & #RDMkit links, as well as to #ROcrate & @isatools connections! #BioHackEU22 @FAIRplus_eu @IHIEurope @ElixirNodeUk
Finally, 📍 project 31-35 at #BioHackEU22 focus on #RDMkit & #FAIRCookbook 🧑🍳, #FAIRtraining, #systembiology, #federated data for #diseases & Workflow Execution Service
@FAIRplus_eu @mygobletorg @ElixirTess
@inutano
ISA Metadata Toolkit retweeted
Congratulation Dom @Terazus Delighted to continue working with you! We are also very happy to have managed to combine your work as #ResearchSoftwareEngineer #RSE in our group & a part-time #PhD both focused on the collaborative @PrecisionTox project with @isatools and #FAIRdata!
I am happy to announce I have been offered a part-time DPhil position at the @UniofOxford. I will research FAIR data management in collaboration with @PrecisionTox. A huge thanks to @SusannaASansone and @Phil_at_OeRC without whom this would not have been possible.