A scientist-engineer interested in bio/cheminformatics algorithms and biophysical simulations to study proteins and peptides. Working at @novonordisk
Denmark
Joined December 2009
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Rodrigo Ochoa retweeted
Check out my new work with @FrankNoeBerlin where we answer if the structure of different protein conformations really can be predicted. nature.com/articles/s41467-0… Also try the Colab to see if your protein has different conformations: colab.research.google.com/gi…
Rodrigo Ochoa retweeted
new: "pyPept: a python library to generate atomistic 2D and 3D representations of peptides" jcheminf.biomedcentral.com/a…
ALT ToC graphics.
I am happy to share this paper about pyPept, a python library to easily create, manipulate, and analyze complex #peptides. The paper is open access and available in the Journal of Cheminformatics: jcheminf.biomedcentral.com/a…
Code available in Github: github.com/Boehringer-Ingelh…
Rodrigo Ochoa retweeted
Anti-obesity drug also protects against heart disease — what happens next? go.nature.com/3QyyE54
Rodrigo Ochoa retweeted
A Colombian man is only the second patient identified with the miraculous ability to defy the devastating Alzheimer’s gene, an international team of scientists report in the journal Nature Medicine.
Doctors hope the two known cases will allow researchers to develop new treatments to protect other people with Alzheimer’s disease. wapo.st/3Oa6FY8
ALT Image of a 3D brain scan next to white bold font reading: "He defied Alzheimer's for two decades. Scientists want to know how."
Rodrigo Ochoa retweeted
Cordialmente invitados a nuestro webinar en español con el Dr. Rodrigo Ochoa @raod85 este sábado 20 de mayo. 🤓🤓🤓.
Link de inscripción:
forms.gle/R59YqRs8r7y3DZXm9
Happy to share in @ChemRxiv the latest version of PepFun (2.0) with improved functionalities to study natural and modified peptides using sequence and structure-based approaches doi.org/10.26434/chemrxiv-20… #compchem
Excelente que puedan participar en el @LatinXChem. En 2021 tuve la fortuna de participar y ganar en la categoría de #LXChemComp. Que disfruten mucho la experiencia y aprendan bastante de sus colegas latinxs aportando a la Química desde distintos lugares en el mundo #compchem
PCCP are also proud to join @digital_rsc in sponsoring the prize for the best #LXChemComp poster @LatinXChem
📆 Join the conference on Monday Nov 28th, 12:00 UTC 📆
¡No faltes!
@theochemmerida @nanoprofe #LatinXRollCall
ALT A promotional graphic showing P-C-C-P and Digital Discovery both sponsoring the poster price for best Computational Chemistry poster at LatinXChem 2022
Rodrigo Ochoa retweeted
Great paper by @raod85 et al. 🇨🇴 Thanks for your contribution to the theme issue "#AI in the Life Sciences by #LatinAmericans" edited by @carolinahortago and @difacquim 👉
journals.elsevier.com/artifi…
"Open protocols for docking and MD-based scoring of peptide substrates" Available on @AILSCI !
🔗Find more here: 2zaj.short.gy/aAKsFr
#openaccess #docking #moleculardynamics #ML
ALT https://github.com/rochoa85/Protocols-Peptide-Binding
Rodrigo Ochoa retweeted
"Open protocols for docking and MD-based scoring of peptide substrates" Available on @AILSCI !
🔗Find more here: 2zaj.short.gy/aAKsFr
#openaccess #docking #moleculardynamics #ML
ALT https://github.com/rochoa85/Protocols-Peptide-Binding
Very happy to share our latest article at @Boehringer and @UdeA about mPARCE, a protocol to optimize bound peptides using natural and non-natural amino acids. It can be run in a local computer to improve peptide binder sequences in just a few hours: link.springer.com/article/10…
If you have a chance to watch this show please do it, it is f***ing amazing. One of the best tv series I have seen in years 🤯
Severance (TV Series 2022– ) - IMDb - m.imdb.com/title/tt11280740/…
Rodrigo Ochoa retweeted
I was recently asked what would happen if I used the same equipment I shot planets with to shoot our moon.
Well, this: A 562 megapixel image, featuring one of the most detailed looks at the craters of our moon I've ever done. Zoom in to your heart's content.
Repurposing drugs or finding hits against tropical diseases like leishmaniasis is a challenging task. In this chapter we summarize the research of almost 10 years using computational approaches to propose a set of anti-Leishmania candidates #compchem #udea
authors.elsevier.com/a/1fs4m…
Rodrigo Ochoa retweeted
Abiotic peptides with high chemical stability can be used to encode the synthesis of small molecules, affording peptide-encoded libraries (PELs) as a new drug discovery platform! @NathalieGrob & my work in @BuchwildGroup & @PenteluteLab now on @ChemRxiv doi.org/10.26434/chemrxiv-20…
Rodrigo Ochoa retweeted
BILN: A Human-Readable Line Notation for Complex Peptides #compchem #cheminformatics
@raod85
pubs.acs.org/doi/10.1021/acs…
#current_issue #JCIM #Application_Notes
Rodrigo Ochoa retweeted
Using #immunopeptidomics with 1,500 tumor and tissue samples, researchers in @ScienceTM have discovered a new cancer-specific epitope shared across various solid tumor stroma that could offer a safe target for adoptive #TCellTherapy. fcld.ly/qbnubh4
Rodrigo Ochoa retweeted
#PapersUdeA -💉🔬 The PanMHC-PARCE protocol seeks to accept mutations that not only improve affinity, but also reduce the affinity gap between alleles. The method allows the engineering of peptides with improved binding properties. 👉 Details: bit.ly/3w8R8xR
We present an easy, human-readable line notation to describe even complex #peptides. The BILN format can represent linear and cyclic peptides with unnatural AAs, branches, and other components (code to convert to/from HELM). Available in JCIM: pubs.acs.org/doi/10.1021/acs… #compchem