Welcome to scNL! A network bringing together researchers interested in single-cell experimental and computational methods as well as their applications
Joined March 2021
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single-cell network Netherlands retweeted
JOB ALERT: Please consider joining our #singlecell and #spatial Genomics group @cnag_eu in beautiful #Barcelona as Computational Biologist.
#lifeisbetteratthebeach
cnag.eu/jobs/computational-b…
single-cell network Netherlands retweeted
Calling all researchers interested in developing better tools for understanding cellular dynamics across time in single cell experiments. We’re hosting the Oz Single Cell Hackathon 9-10 Dec in Sydney. Fill out EOI before 10 Oct! Travel awards available docs.google.com/forms/d/e/1F…
single-cell network Netherlands retweeted
Come and join us! Lots of cool psatial data and interesting questions to drive our knowledge on duchenne therapies
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single-cell network Netherlands retweeted
Excited to contribute to the landmark @biorxivpreprint article led by @eportacangen that benchmarks four different #spatial #transcriptomics platforms: VISIUM, VISIUM CytAssist, Xenium @10xGenomics, and CosMx @nanostringtech. Pros and cons, select the best for your study! Or combine them !
Comparison of spatial transcriptomics technologies across six cancer types | bioRxiv
doi: doi.org/10.1101/2024.05.21.5…
single-cell network Netherlands retweeted
It was an absolute pleasure presenting our scEdU-seq technique during the @scNL4 conference at @prinsesmaximac. Big thanks to the organizers of the meeting!!
#dnareplication #singlecell #techdev #genomestability
ALT scEdU-seq presentation at Single Cell Network Netherlands
Great job opportunity at @nyscf! jobs.lever.co/nyscf-2/5b4f78… Join the comp bio team to leverage the power of stem cells to find cures for major diseases. If you value challenging and collaborative projects this position might be a good fit for you. Work visa sponsorship possible
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single-cell network Netherlands retweeted
Super excited about this collab. We will bring together unique model system with single-cell sequencing to get a handle on how environmental factors impact development. Funding opportunities via the EIPOD program embl.org/about/info/postdoct…
We’re looking for a postdoc shared with @OliverStegle. Join us: design ambitious multi-sample single-cell experiments in developing embryos, model temporal response patterns, test predictions. Open to different backgrounds and expertise.
If you’re interested, get in touch soon!
single-cell network Netherlands retweeted
✂️Splice splice baby!✂️
New paper just out in @CellStemCell integrating @nanopore long read single-cell isoform mapping into our broader genotype-phenotype vision for clonal mosaicism !
authors.elsevier.com/a/1hat9…
Great work by @yogeshgoyallab @arjunrajlab et al: diverse cell types can emerge from single-cell-derived melanoma cancer cells upon treatment as a result of intrinsic differences in molecular expression preceding drug exposure #scRNAseq #barcoding #FateMap
nature.com/articles/s41586-0…
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Amazing work! Among others, combined RNA export with genetic barcoding and sequencing to non-destructively monitor cell population dynamics. Big congrats to the authors! @FelixHorns @ElowitzLab
Want to sequence RNA from cells without killing them or deliver RNA programs from cell to cell? Today in Cell, we present RNA exporters, which package and secrete cellular RNA, for non-destructively monitoring cell dynamics by sequencing and delivering RNA authors.elsevier.com/sd/arti…
ALT An engineered RNA export system enables non-destructive monitoring of cell dynamics and delivery of RNA from cell to cell.
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single-cell network Netherlands retweeted
Quantify gene expression variability at single-cell resolution in cell state space with our VarID2 method coming out in @GenomeBiology. Magnificent work by @ReynaERosales with great support from our collaborators Jasmin Rettkowski and @Nina_CabezasW. 🧵👇
single-cell network Netherlands retweeted
Creativity evolves in science. The first few projects typically involve working on someone else’s idea or making small advancements, but then novel ideas start to come and the real fun begins.
single-cell network Netherlands retweeted
Excited to share Storm (shorturl.at/cizR2) for transient dynamics in gene-cell specific kinetics & RNA velocity via metabolic labeling augmented scRNA-seq. Kudos to Qiangwei from Tiejun Li's lab! Storm extended dynamo & will be incorporated in v1.4: shorturl.at/ftxy5
single-cell network Netherlands retweeted
Interested in the future of single-cell biology? 🔮 Check this inspiring perspective from leading researchers in the field, including
@IdoAmitLab and @SItzkovitz.
embopress.org/doi/full/10.15…
Do you work in stem cell/regenerative biology and have developed a new method to analyze single-cell data, created a useful data base or want to review your favorite tools? Submit your manuscript to this Research Topic in Frontiers in Bioinformatics frontiersin.org/research-top…
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single-cell network Netherlands retweeted
That's a wrap for #singlecellgenomicsday 2023! Thanks to our amazing speakers, and to all of you for tuning in!
Its a privilege to celebrate the state of the field for the 7th year in a row, and we look forward to seeing you next year!
(And thanks @ATJCagan for illustrating!)
single-cell network Netherlands retweeted
It was great to be presenting our work @scNL4 annual meeting last Thursday. Thanks to the organisers for setting up this great conference. Looking forward to the next editions already.
@ahmedElkoussy @LUMC_Leiden
single-cell network Netherlands retweeted
Had a great time at the 1st Annual Meeting of the single-cell network Netherlands @scNL4. Congrats to the organizers! Proud to be able to present my work for such an amazing audience. #spatial #transcriptomics #immunophenotyping #singlecell #colorectalcancer
single-cell network Netherlands retweeted
Proud te be able to present our recent work on the Human Lung Cell Atlas on the @scNL4 annual meeting, with common pathogenic cell states observed across multiple lung diseases! Out in print soon @MDLuecken @SikkemaLisa @humancellatlas @cziscience @researchumcg @GriacG
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