Biochemist | Düsseldorf | PhD Student @WeberLab_HHU @ceplas_1
Nordrhein-Westfalen, Deutschland
Joined July 2016
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Last one from my PhD @WeberLab_HHU! We show bundle sheath function in C3-C4 intermediate Moricandia by single-nuclei sequencing.
Now off to new adventures at @WGGC_de
Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 ... biorxiv.org/cgi/content/shor… #biorxiv_plants
Sebastian Triesch retweeted
Single-nuclei sequencing of Moricandia arvensis reveals bundle sheath cell function in the photorespiratory shuttle of C3-C4 ... biorxiv.org/cgi/content/shor… #biorxiv_plants
#seb2024 @SEBiology was SO cool. Enjoyed Prague, met old friends and made new ones.
Sebastian Triesch retweeted
🚀 Exciting new research alert! Check out "Predmoter - Cross-species prediction of plant promoter and enhancer regions" 🌿. This deep learning tool predicts ATAC-seq and ChIP-seq read coverage from DNA sequences, reducing cost and time in plant genomics! Read more: doi.org/10.1093/bioadv/vbae0… 📘 #Bioinformatics #PlantScience #Genomics #AI @SebTriesch @SchluterUrte
Sebastian Triesch retweeted
Peer-reviewed version finally out: Predmoter—cross-species prediction of plant promoter and enhancer regions academic.oup.com/bioinformat…
Sebastian Triesch retweeted
A week left to apply! 🚨 I’m looking for a research technician to join us @OxfordBiology and to help set up an efficient transformation pipeline in the C4 species Gynandropsis. Come work with us on leaf anatomy and photosynthesis! 🌱🪴 Find out more 👇 my.corehr.com/pls/uoxrecruit…
Sebastian Triesch retweeted
Our paper on the dissection of three light-responsive plant enhancers is out: academic.oup.com/plcell/adva…
My favorite finding: the enhancers rely on suboptimal transcription factor binding sites. This is consistent with the beautiful work on animal enhancers from @EKFarley
I‘m proud to have received the Reinhold von Sengbusch Award by @PlantScienceDBG at last week‘s #mbp2024 conference! Thanks to my group @WeberLab_HHU for your great input preparing my talk! – at Düsseldorf, Germany
Sebastian Triesch retweeted
Great work @Pabster212! Investigating the cis-Regulatory Basis of C3 and C4 Photosynthesis in Grasses at Single-Cell Resolution biorxiv.org/content/10.1101/…
Sebastian Triesch retweeted
Transposable elements contribute to the establishment of the glycine shuttle in Brassicaceae species - Triesch - Plant Biology - Wiley Online Library onlinelibrary.wiley.com/doi/… @SebTriesch @JBouvierPlants @Steve__Kelly @AlisandraDenton @SchluterUrte @vReichel_Deland
Finally out, our paper on #transposons and their role in C3-C4 intermediate photosynthesis! onlinelibrary.wiley.com/doi/…
Thanks to all involved! @WeberLab_HHU @apmweber @AlisandraDenton @vReichel_Deland @Steve__Kelly @JBouvierPlants – at Düsseldorf, Germany
Sebastian Triesch retweeted
'Brassicaceae display variation in efficiency of photorespiratory carbon-recapturing mechanisms' - Urte Schlüter, Jacques W Bouvier, Ricardo Guerreiro, Milena Malisic, Carina Kontny, Philipp Westhoff, Benjamin Stich, @apmweber 🌿
bit.ly/3rc8pXK
ALT CO2 compensation points in selected Brassicaceae. CO2 compensation points were measured in young, fully expanded leaves of greenhouse-grown plants. The letters above each box indicate the statistical grouping determined by ANOVA followed by HSD post-hoc test with α=0.05. The tested taxa are coloured according to photosynthesis type as C3 (grey), C3–C4 (blue), and C4 (red). Plant names have been abbreviated for legibility and are provided in full in the Materials and methods.
Sebastian Triesch retweeted
I’m happy to share “Cooperativity and additivity in plant enhancers”, our newest paper out now on bioRxiv: biorxiv.org/content/10.1101/…
We dissected three light-responsive plant enhancers and found evidence for cooperative and additive interactions between functional enhancer regions.
Sebastian Triesch retweeted
When you work on a bunch of weird non-model species this kind of prediction is everything! Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/content/10.1101/…
Sebastian Triesch retweeted
#Predmoter deep neural network. input: genome sequence FASTA; output: prediction of ATAC- and Histone H3 trimethylated at lysine 4 (H3K4me3) ChIP-seq. Documentation/ download from: github.com/weberlab-hhu/Pred…
@AlisandraDenton @SebTriesch @WeberLab_HHU @SchluterUrte @vReichel_Deland
Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/cgi/content/shor… #bioRxiv
Sebastian Triesch retweeted
Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/content/10.1101/…
Sebastian Triesch retweeted
The identification of CREs with Predmoter with only DNA sequence as input! 🤓
Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/content/10.1101/…
You want to have cool ATAC and ChIP-seq data for your favorite plant genome but you don’t like pipetting? Check out Predmoter, our DL tool predicting open chromatin! (Yes, it works) – at Düsseldorf, Germany
Predmoter - Cross-species prediction of plant promoter and enhancer regions biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
Sebastian Triesch retweeted
Eager to delve into the role of metabolites in microbial communities? Join our team in the CRC 1535 as a PostDoc in the Metabolomics and Metabolism Laboratory! Let your expertise impact our research sfb1535.hhu.de/open-position…
#PostDoc #Metabolomics #MicrobialCommunities
Sebastian Triesch retweeted
A transcription factor module mediating C2 photosynthesis biorxiv.org/cgi/content/shor… #biorxiv_plants